JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NELFCD_chr20_58976256_59000113	0/0	t0002	492	180	12	35	107	5	21	copy fasta	NELFCD	chr20	58976256	59000113
NELFCD_chr20_58976256_59000113	0/0	t0003	492	51	1	10	28	2	10	copy fasta	NELFCD	chr20	58976256	59000113
NELFCD_chr20_58976256_59000113	0/0	t0004	492	9	9	0	0	0	0	copy fasta	NELFCD	chr20	58976256	59000113
NELFCD_chr20_58976256_59000113	0/0	t0005	492	4	2	2	0	0	0	copy fasta	NELFCD	chr20	58976256	59000113
NELFCD_chr20_58976256_59000113	0/0	t0006	492	1	0	0	1	0	0	copy fasta	NELFCD	chr20	58976256	59000113
NELFE_chr6_31947087_31963971	0/1	t0001	303	402	78	73	197	16	37	copy fasta	NELFE	chr6	31947087	31963971
NELFE_chr6_31947087_31963971	0/0	t0002	303	38	15	8	7	2	6	copy fasta	NELFE	chr6	31947087	31963971
NELFE_chr6_31947087_31963971	0/0	t0003	303	5	1	3	0	0	1	copy fasta	NELFE	chr6	31947087	31963971
NELL1_chr11_20664586_21580686	1/1	t0001	803	73	43	12	7	0	9	copy fasta	NELL1	chr11	20664586	21580686
NELL1_chr11_20664586_21580686	0/0	t0002	803	5	5	0	0	0	0	copy fasta	NELL1	chr11	20664586	21580686
NELL1_chr11_20664586_21580686	0/0	t0003	803	3	3	0	0	0	0	copy fasta	NELL1	chr11	20664586	21580686
NELL1_chr11_20664586_21580686	0/0	t0004	803	2	2	0	0	0	0	copy fasta	NELL1	chr11	20664586	21580686
NELL1_chr11_20664586_21580686	0/0	t0005	803	2	2	0	0	0	0	copy fasta	NELL1	chr11	20664586	21580686
NELL1_chr11_20664586_21580686	0/0	t0006	803	1	0	0	0	0	1	copy fasta	NELL1	chr11	20664586	21580686
NELL1_chr11_20664586_21580686	0/0	t0007	803	1	1	0	0	0	0	copy fasta	NELL1	chr11	20664586	21580686
NELL1_chr11_20664586_21580686	0/0	t0008	803	1	0	0	1	0	0	copy fasta	NELL1	chr11	20664586	21580686
NELL2_chr12_44503278_44881315	1/1	t0001	1103	63	24	21	7	4	5	copy fasta	NELL2	chr12	44503278	44881315
NELL2_chr12_44503278_44881315	0/0	t0002	1103	23	21	1	1	0	0	copy fasta	NELL2	chr12	44503278	44881315
NELL2_chr12_44503278_44881315	0/0	t0003	1103	20	0	5	11	1	3	copy fasta	NELL2	chr12	44503278	44881315
NELL2_chr12_44503278_44881315	0/0	t0004	1103	12	6	1	4	0	1	copy fasta	NELL2	chr12	44503278	44881315
NELL2_chr12_44503278_44881315	0/0	t0005	1103	12	4	2	3	2	1	copy fasta	NELL2	chr12	44503278	44881315
NELL2_chr12_44503278_44881315	0/0	t0006	1103	10	0	1	7	1	1	copy fasta	NELL2	chr12	44503278	44881315
NELL2_chr12_44503278_44881315	0/0	t0007	1103	5	5	0	0	0	0	copy fasta	NELL2	chr12	44503278	44881315
NELL2_chr12_44503278_44881315	0/0	t0008	1103	4	0	1	2	0	1	copy fasta	NELL2	chr12	44503278	44881315
NELL2_chr12_44503278_44881315	0/0	t0009	1103	3	3	0	0	0	0	copy fasta	NELL2	chr12	44503278	44881315
NELL2_chr12_44503278_44881315	0/0	t0010	1103	3	3	0	0	0	0	copy fasta	NELL2	chr12	44503278	44881315
NELL2_chr12_44503278_44881315	0/0	t0011	1103	2	2	0	0	0	0	copy fasta	NELL2	chr12	44503278	44881315
NELL2_chr12_44503278_44881315	0/0	t0012	1103	1	0	0	1	0	0	copy fasta	NELL2	chr12	44503278	44881315
NEMF_chr14_49777083_49857788	0/1	t0001	2585	133	43	31	41	4	13	copy fasta	NEMF	chr14	49777083	49857788
NEMF_chr14_49777083_49857788	0/0	t0002	2586	41	15	13	12	1	0	copy fasta	NEMF	chr14	49777083	49857788
NEMF_chr14_49777083_49857788	0/0	t0003	2585	25	8	12	1	3	1	copy fasta	NEMF	chr14	49777083	49857788
NEMF_chr14_49777083_49857788	0/0	t0004	2591	12	12	0	0	0	0	copy fasta	NEMF	chr14	49777083	49857788
NEMF_chr14_49777083_49857788	0/0	t0005	2585	4	0	0	4	0	0	copy fasta	NEMF	chr14	49777083	49857788
NEMF_chr14_49777083_49857788	0/0	t0006	2586	1	1	0	0	0	0	copy fasta	NEMF	chr14	49777083	49857788
NEMF_chr14_49777083_49857788	0/0	t0007	2585	1	1	0	0	0	0	copy fasta	NEMF	chr14	49777083	49857788
NEMF_chr14_49777083_49857788	0/0	t0008	2589	1	1	0	0	0	0	copy fasta	NEMF	chr14	49777083	49857788
NEMF_chr14_49777083_49857788	0/0	t0009	2588	1	0	0	0	0	1	copy fasta	NEMF	chr14	49777083	49857788
NEMF_chr14_49777083_49857788	0/0	t0010	2585	1	0	0	0	0	1	copy fasta	NEMF	chr14	49777083	49857788
NEMF_chr14_49777083_49857788	0/0	t0011	2586	1	1	0	0	0	0	copy fasta	NEMF	chr14	49777083	49857788
NEMF_chr14_49777083_49857788	1/0	t0012	2589	1	0	0	0	0	0	copy fasta	NEMF	chr14	49777083	49857788
NEMP1_chr12_57050643_57083791	1/1	t0001	4283	143	24	32	62	5	18	copy fasta	NEMP1	chr12	57050643	57083791
NEMP1_chr12_57050643_57083791	0/0	t0002	4283	78	8	16	35	7	12	copy fasta	NEMP1	chr12	57050643	57083791
NEMP1_chr12_57050643_57083791	0/0	t0003	4284	59	14	12	25	2	6	copy fasta	NEMP1	chr12	57050643	57083791
NEMP1_chr12_57050643_57083791	0/0	t0004	4283	35	0	0	35	0	0	copy fasta	NEMP1	chr12	57050643	57083791
NEMP1_chr12_57050643_57083791	0/0	t0005	4284	29	21	4	0	1	3	copy fasta	NEMP1	chr12	57050643	57083791
NEMP1_chr12_57050643_57083791	0/0	t0006	4284	7	6	1	0	0	0	copy fasta	NEMP1	chr12	57050643	57083791
NEMP1_chr12_57050643_57083791	0/0	t0007	4283	7	0	5	0	0	2	copy fasta	NEMP1	chr12	57050643	57083791
NEMP1_chr12_57050643_57083791	0/0	t0008	4283	6	5	1	0	0	0	copy fasta	NEMP1	chr12	57050643	57083791
NEMP1_chr12_57050643_57083791	0/0	t0009	4284	5	4	1	0	0	0	copy fasta	NEMP1	chr12	57050643	57083791
NEMP1_chr12_57050643_57083791	0/0	t0010	4283	4	0	0	4	0	0	copy fasta	NEMP1	chr12	57050643	57083791