JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NEMP1_chr12_57050643_57083791	0/0	t0011	4284	2	2	0	0	0	0	copy fasta	NEMP1	chr12	57050643	57083791
NEMP1_chr12_57050643_57083791	0/0	t0012	4284	2	0	1	0	1	0	copy fasta	NEMP1	chr12	57050643	57083791
NEMP1_chr12_57050643_57083791	0/0	t0013	4283	2	0	0	2	0	0	copy fasta	NEMP1	chr12	57050643	57083791
NEMP1_chr12_57050643_57083791	0/0	t0014	4284	2	0	0	2	0	0	copy fasta	NEMP1	chr12	57050643	57083791
NEMP1_chr12_57050643_57083791	0/0	t0015	4284	2	2	0	0	0	0	copy fasta	NEMP1	chr12	57050643	57083791
NEMP1_chr12_57050643_57083791	0/0	t0016	4283	1	0	1	0	0	0	copy fasta	NEMP1	chr12	57050643	57083791
NEMP1_chr12_57050643_57083791	0/0	t0017	4284	1	0	1	0	0	0	copy fasta	NEMP1	chr12	57050643	57083791
NEMP1_chr12_57050643_57083791	0/0	t0018	4283	1	0	0	1	0	0	copy fasta	NEMP1	chr12	57050643	57083791
NEMP1_chr12_57050643_57083791	0/0	t0019	4283	1	0	0	1	0	0	copy fasta	NEMP1	chr12	57050643	57083791
NEMP1_chr12_57050643_57083791	0/0	t0020	4283	1	0	0	1	0	0	copy fasta	NEMP1	chr12	57050643	57083791
NEMP1_chr12_57050643_57083791	0/0	t0021	4283	1	0	0	1	0	0	copy fasta	NEMP1	chr12	57050643	57083791
NEMP1_chr12_57050643_57083791	0/0	t0022	4283	1	0	0	1	0	0	copy fasta	NEMP1	chr12	57050643	57083791
NEMP1_chr12_57050643_57083791	0/0	t0023	4284	1	0	0	0	0	1	copy fasta	NEMP1	chr12	57050643	57083791
NEMP1_chr12_57050643_57083791	0/0	t0024	4284	1	0	1	0	0	0	copy fasta	NEMP1	chr12	57050643	57083791
NEMP1_chr12_57050643_57083791	0/0	t0025	4284	1	0	0	1	0	0	copy fasta	NEMP1	chr12	57050643	57083791
NEMP1_chr12_57050643_57083791	0/0	t0026	4284	1	0	0	1	0	0	copy fasta	NEMP1	chr12	57050643	57083791
NEMP1_chr12_57050643_57083791	0/0	t0027	4284	1	1	0	0	0	0	copy fasta	NEMP1	chr12	57050643	57083791
NEMP1_chr12_57050643_57083791	0/0	t0028	4283	1	1	0	0	0	0	copy fasta	NEMP1	chr12	57050643	57083791
NEMP1_chr12_57050643_57083791	0/0	t0029	4283	1	0	0	1	0	0	copy fasta	NEMP1	chr12	57050643	57083791
NEMP1_chr12_57050643_57083791	0/0	t0030	4283	1	0	0	1	0	0	copy fasta	NEMP1	chr12	57050643	57083791
NEMP2_chr2_190499338_190539722	0/1	t0001	4921	111	23	32	49	0	6	copy fasta	NEMP2	chr2	190499338	190539722
NEMP2_chr2_190499338_190539722	0/0	t0002	4921	87	22	8	52	3	2	copy fasta	NEMP2	chr2	190499338	190539722
NEMP2_chr2_190499338_190539722	0/0	t0003	4921	49	0	16	18	4	11	copy fasta	NEMP2	chr2	190499338	190539722
NEMP2_chr2_190499338_190539722	0/0	t0004	4921	47	1	4	36	0	6	copy fasta	NEMP2	chr2	190499338	190539722
NEMP2_chr2_190499338_190539722	0/0	t0005	4921	35	24	4	1	2	4	copy fasta	NEMP2	chr2	190499338	190539722
NEMP2_chr2_190499338_190539722	0/0	t0006	4921	25	0	2	21	2	0	copy fasta	NEMP2	chr2	190499338	190539722
NEMP2_chr2_190499338_190539722	0/0	t0007	4921	7	0	0	7	0	0	copy fasta	NEMP2	chr2	190499338	190539722
NEMP2_chr2_190499338_190539722	0/0	t0008	4925	4	1	1	0	0	2	copy fasta	NEMP2	chr2	190499338	190539722
NEMP2_chr2_190499338_190539722	0/0	t0009	4921	4	0	4	0	0	0	copy fasta	NEMP2	chr2	190499338	190539722
NEMP2_chr2_190499338_190539722	0/0	t0010	4921	3	3	0	0	0	0	copy fasta	NEMP2	chr2	190499338	190539722
NEMP2_chr2_190499338_190539722	0/0	t0011	4921	2	2	0	0	0	0	copy fasta	NEMP2	chr2	190499338	190539722
NEMP2_chr2_190499338_190539722	0/0	t0012	4921	2	2	0	0	0	0	copy fasta	NEMP2	chr2	190499338	190539722
NEMP2_chr2_190499338_190539722	0/0	t0013	4925	2	0	0	0	0	2	copy fasta	NEMP2	chr2	190499338	190539722
NEMP2_chr2_190499338_190539722	0/0	t0014	4921	2	2	0	0	0	0	copy fasta	NEMP2	chr2	190499338	190539722
NEMP2_chr2_190499338_190539722	0/0	t0015	4921	2	0	0	0	0	2	copy fasta	NEMP2	chr2	190499338	190539722
NEMP2_chr2_190499338_190539722	0/0	t0016	4921	2	2	0	0	0	0	copy fasta	NEMP2	chr2	190499338	190539722
NEMP2_chr2_190499338_190539722	0/0	t0017	4921	2	2	0	0	0	0	copy fasta	NEMP2	chr2	190499338	190539722
NEMP2_chr2_190499338_190539722	0/0	t0018	4921	2	0	0	0	0	2	copy fasta	NEMP2	chr2	190499338	190539722
NEMP2_chr2_190499338_190539722	0/0	t0019	4921	1	0	0	1	0	0	copy fasta	NEMP2	chr2	190499338	190539722
NEMP2_chr2_190499338_190539722	0/0	t0020	4921	1	0	0	0	0	1	copy fasta	NEMP2	chr2	190499338	190539722
NEMP2_chr2_190499338_190539722	0/0	t0021	4921	1	0	0	1	0	0	copy fasta	NEMP2	chr2	190499338	190539722
NEMP2_chr2_190499338_190539722	0/0	t0022	4921	1	1	0	0	0	0	copy fasta	NEMP2	chr2	190499338	190539722
NEMP2_chr2_190499338_190539722	0/0	t0023	4921	1	1	0	0	0	0	copy fasta	NEMP2	chr2	190499338	190539722
NEMP2_chr2_190499338_190539722	1/0	t0024	4919	1	0	0	0	0	0	copy fasta	NEMP2	chr2	190499338	190539722
NEMP2_chr2_190499338_190539722	0/0	t0025	4921	1	1	0	0	0	0	copy fasta	NEMP2	chr2	190499338	190539722
NEMP2_chr2_190499338_190539722	0/0	t0026	4921	1	0	0	1	0	0	copy fasta	NEMP2	chr2	190499338	190539722
NEMP2_chr2_190499338_190539722	0/0	t0027	4921	1	1	0	0	0	0	copy fasta	NEMP2	chr2	190499338	190539722
NEMP2_chr2_190499338_190539722	0/0	t0028	4921	1	0	0	1	0	0	copy fasta	NEMP2	chr2	190499338	190539722
NEMP2_chr2_190499338_190539722	0/0	t0029	4921	1	1	0	0	0	0	copy fasta	NEMP2	chr2	190499338	190539722
NEMP2_chr2_190499338_190539722	0/0	t0030	4921	1	1	0	0	0	0	copy fasta	NEMP2	chr2	190499338	190539722