JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NEMP2_chr2_190499338_190539722	0/0	t0031	4921	1	0	0	1	0	0	copy fasta	NEMP2	chr2	190499338	190539722
NEMP2_chr2_190499338_190539722	0/0	t0032	4921	1	0	1	0	0	0	copy fasta	NEMP2	chr2	190499338	190539722
NEMP2_chr2_190499338_190539722	0/0	t0033	4921	1	0	0	0	1	0	copy fasta	NEMP2	chr2	190499338	190539722
NEMP2_chr2_190499338_190539722	0/0	t0034	4921	1	0	0	1	0	0	copy fasta	NEMP2	chr2	190499338	190539722
NENF_chr1_212427920_212451379	1/1	t0001	398	415	92	72	195	14	40	copy fasta	NENF	chr1	212427920	212451379
NENF_chr1_212427920_212451379	0/0	t0002	398	1	0	0	1	0	0	copy fasta	NENF	chr1	212427920	212451379
NEO1_chr15_73047463_73310205	0/1	t0001	2724	103	10	28	41	5	18	copy fasta	NEO1	chr15	73047463	73310205
NEO1_chr15_73047463_73310205	0/0	t0002	2723	91	4	14	50	8	15	copy fasta	NEO1	chr15	73047463	73310205
NEO1_chr15_73047463_73310205	1/0	t0003	2723	90	43	9	27	1	9	copy fasta	NEO1	chr15	73047463	73310205
NEO1_chr15_73047463_73310205	0/0	t0004	2723	6	0	0	6	0	0	copy fasta	NEO1	chr15	73047463	73310205
NEO1_chr15_73047463_73310205	0/0	t0005	2724	5	0	0	3	0	2	copy fasta	NEO1	chr15	73047463	73310205
NEO1_chr15_73047463_73310205	0/0	t0006	2723	5	5	0	0	0	0	copy fasta	NEO1	chr15	73047463	73310205
NEO1_chr15_73047463_73310205	0/0	t0007	2723	4	0	0	4	0	0	copy fasta	NEO1	chr15	73047463	73310205
NEO1_chr15_73047463_73310205	0/0	t0008	2714	2	0	2	0	0	0	copy fasta	NEO1	chr15	73047463	73310205
NEO1_chr15_73047463_73310205	0/0	t0009	2724	2	0	0	2	0	0	copy fasta	NEO1	chr15	73047463	73310205
NEO1_chr15_73047463_73310205	0/0	t0010	2724	2	0	0	2	0	0	copy fasta	NEO1	chr15	73047463	73310205
NEO1_chr15_73047463_73310205	0/0	t0011	2724	1	0	0	1	0	0	copy fasta	NEO1	chr15	73047463	73310205
NEO1_chr15_73047463_73310205	0/0	t0012	2724	1	0	0	0	0	1	copy fasta	NEO1	chr15	73047463	73310205
NEO1_chr15_73047463_73310205	0/0	t0013	2724	1	0	1	0	0	0	copy fasta	NEO1	chr15	73047463	73310205
NEO1_chr15_73047463_73310205	0/0	t0014	2724	1	1	0	0	0	0	copy fasta	NEO1	chr15	73047463	73310205
NEO1_chr15_73047463_73310205	0/0	t0015	2724	1	1	0	0	0	0	copy fasta	NEO1	chr15	73047463	73310205
NEO1_chr15_73047463_73310205	0/0	t0016	2723	1	0	1	0	0	0	copy fasta	NEO1	chr15	73047463	73310205
NEO1_chr15_73047463_73310205	0/0	t0017	2723	1	0	0	1	0	0	copy fasta	NEO1	chr15	73047463	73310205
NEO1_chr15_73047463_73310205	0/0	t0018	2723	1	0	0	1	0	0	copy fasta	NEO1	chr15	73047463	73310205
NEO1_chr15_73047463_73310205	0/0	t0019	2723	1	0	1	0	0	0	copy fasta	NEO1	chr15	73047463	73310205
NEO1_chr15_73047463_73310205	0/0	t0020	2723	1	0	0	0	0	1	copy fasta	NEO1	chr15	73047463	73310205
NEO1_chr15_73047463_73310205	0/0	t0021	2723	1	1	0	0	0	0	copy fasta	NEO1	chr15	73047463	73310205
NEO1_chr15_73047463_73310205	0/0	t0022	2723	1	1	0	0	0	0	copy fasta	NEO1	chr15	73047463	73310205
NEO1_chr15_73047463_73310205	0/0	t0023	2723	1	1	0	0	0	0	copy fasta	NEO1	chr15	73047463	73310205
NEO1_chr15_73047463_73310205	0/0	t0024	2723	1	1	0	0	0	0	copy fasta	NEO1	chr15	73047463	73310205
NEPRO_chr3_112997444_113024671	1/0	t0001	3117	126	22	22	72	2	7	copy fasta	NEPRO	chr3	112997444	113024671
NEPRO_chr3_112997444_113024671	0/1	t0002	3119	119	1	37	52	10	18	copy fasta	NEPRO	chr3	112997444	113024671
NEPRO_chr3_112997444_113024671	0/0	t0003	3112	67	13	0	50	1	3	copy fasta	NEPRO	chr3	112997444	113024671
NEPRO_chr3_112997444_113024671	0/0	t0004	3115	30	0	0	30	0	0	copy fasta	NEPRO	chr3	112997444	113024671
NEPRO_chr3_112997444_113024671	0/0	t0005	3115	18	10	0	0	0	8	copy fasta	NEPRO	chr3	112997444	113024671
NEPRO_chr3_112997444_113024671	0/0	t0006	3115	12	8	3	0	1	0	copy fasta	NEPRO	chr3	112997444	113024671
NEPRO_chr3_112997444_113024671	0/0	t0007	3113	8	8	0	0	0	0	copy fasta	NEPRO	chr3	112997444	113024671
NEPRO_chr3_112997444_113024671	0/0	t0008	3107	7	7	0	0	0	0	copy fasta	NEPRO	chr3	112997444	113024671
NEPRO_chr3_112997444_113024671	0/0	t0009	3121	7	1	1	1	1	3	copy fasta	NEPRO	chr3	112997444	113024671
NEPRO_chr3_112997444_113024671	0/0	t0010	3110	7	6	1	0	0	0	copy fasta	NEPRO	chr3	112997444	113024671
NEPRO_chr3_112997444_113024671	0/0	t0011	3117	5	0	0	5	0	0	copy fasta	NEPRO	chr3	112997444	113024671
NEPRO_chr3_112997444_113024671	0/0	t0012	3122	5	0	4	0	1	0	copy fasta	NEPRO	chr3	112997444	113024671
NEPRO_chr3_112997444_113024671	0/0	t0013	3119	4	0	2	1	0	1	copy fasta	NEPRO	chr3	112997444	113024671
NEPRO_chr3_112997444_113024671	0/0	t0014	3115	4	4	0	0	0	0	copy fasta	NEPRO	chr3	112997444	113024671
NEPRO_chr3_112997444_113024671	0/0	t0015	3115	4	0	1	2	0	1	copy fasta	NEPRO	chr3	112997444	113024671
NEPRO_chr3_112997444_113024671	0/0	t0016	3115	3	2	1	0	0	0	copy fasta	NEPRO	chr3	112997444	113024671
NEPRO_chr3_112997444_113024671	0/0	t0017	3117	3	0	0	1	0	2	copy fasta	NEPRO	chr3	112997444	113024671
NEPRO_chr3_112997444_113024671	0/0	t0018	3115	3	3	0	0	0	0	copy fasta	NEPRO	chr3	112997444	113024671
NEPRO_chr3_112997444_113024671	0/0	t0019	3117	3	0	1	0	0	2	copy fasta	NEPRO	chr3	112997444	113024671
NEPRO_chr3_112997444_113024671	0/0	t0020	3112	3	3	0	0	0	0	copy fasta	NEPRO	chr3	112997444	113024671