Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ABRAXAS2_chr10_124796819_124841667	0/0	t0005	1708	7	7	0	0	0	0	copy fasta	ABRAXAS2	chr10	124796819	124841667
ABRAXAS2_chr10_124796819_124841667	0/0	t0006	1707	4	0	2	0	1	1	copy fasta	ABRAXAS2	chr10	124796819	124841667
ABRAXAS2_chr10_124796819_124841667	0/0	t0007	1706	3	0	0	3	0	0	copy fasta	ABRAXAS2	chr10	124796819	124841667
ABRAXAS2_chr10_124796819_124841667	0/0	t0008	1707	3	3	0	0	0	0	copy fasta	ABRAXAS2	chr10	124796819	124841667
ABRAXAS2_chr10_124796819_124841667	0/0	t0009	1707	3	3	0	0	0	0	copy fasta	ABRAXAS2	chr10	124796819	124841667
ABRAXAS2_chr10_124796819_124841667	0/0	t0010	1707	2	0	0	2	0	0	copy fasta	ABRAXAS2	chr10	124796819	124841667
ABRAXAS2_chr10_124796819_124841667	0/0	t0011	1707	2	0	0	0	0	2	copy fasta	ABRAXAS2	chr10	124796819	124841667
ABRAXAS2_chr10_124796819_124841667	0/0	t0012	1707	1	1	0	0	0	0	copy fasta	ABRAXAS2	chr10	124796819	124841667
ABRAXAS2_chr10_124796819_124841667	0/0	t0013	1707	1	1	0	0	0	0	copy fasta	ABRAXAS2	chr10	124796819	124841667
ABRAXAS2_chr10_124796819_124841667	0/0	t0014	1707	1	1	0	0	0	0	copy fasta	ABRAXAS2	chr10	124796819	124841667
ABRAXAS2_chr10_124796819_124841667	0/0	t0015	1707	1	1	0	0	0	0	copy fasta	ABRAXAS2	chr10	124796819	124841667
ABRAXAS2_chr10_124796819_124841667	0/0	t0016	1707	1	0	0	1	0	0	copy fasta	ABRAXAS2	chr10	124796819	124841667
ABRAXAS2_chr10_124796819_124841667	0/0	t0017	1707	1	0	0	1	0	0	copy fasta	ABRAXAS2	chr10	124796819	124841667
ABRAXAS2_chr10_124796819_124841667	0/0	t0018	1707	1	1	0	0	0	0	copy fasta	ABRAXAS2	chr10	124796819	124841667
ABRAXAS2_chr10_124796819_124841667	0/0	t0019	1707	1	0	0	1	0	0	copy fasta	ABRAXAS2	chr10	124796819	124841667
ABRAXAS2_chr10_124796819_124841667	0/0	t0020	1707	1	1	0	0	0	0	copy fasta	ABRAXAS2	chr10	124796819	124841667
ABRAXAS2_chr10_124796819_124841667	0/0	t0021	1707	1	1	0	0	0	0	copy fasta	ABRAXAS2	chr10	124796819	124841667
ABRAXAS2_chr10_124796819_124841667	0/0	t0022	1707	1	0	0	1	0	0	copy fasta	ABRAXAS2	chr10	124796819	124841667
ABRA_chr8_106754483_106775244	1/1	t0001	1609	312	53	61	147	14	35	copy fasta	ABRA	chr8	106754483	106775244
ABRA_chr8_106754483_106775244	0/0	t0002	1609	71	16	4	45	1	5	copy fasta	ABRA	chr8	106754483	106775244
ABRA_chr8_106754483_106775244	0/0	t0003	1604	33	15	13	0	2	3	copy fasta	ABRA	chr8	106754483	106775244
ABRA_chr8_106754483_106775244	0/0	t0004	1605	12	11	1	0	0	0	copy fasta	ABRA	chr8	106754483	106775244
ABRA_chr8_106754483_106775244	0/0	t0005	1609	5	0	0	5	0	0	copy fasta	ABRA	chr8	106754483	106775244
ABRA_chr8_106754483_106775244	0/0	t0006	1609	2	0	0	2	0	0	copy fasta	ABRA	chr8	106754483	106775244
ABRA_chr8_106754483_106775244	0/0	t0007	1609	1	0	1	0	0	0	copy fasta	ABRA	chr8	106754483	106775244
ABRA_chr8_106754483_106775244	0/0	t0008	1609	1	0	0	0	1	0	copy fasta	ABRA	chr8	106754483	106775244
ABRA_chr8_106754483_106775244	0/0	t0009	1609	1	0	0	0	0	1	copy fasta	ABRA	chr8	106754483	106775244
ABRA_chr8_106754483_106775244	0/0	t0010	1609	1	1	0	0	0	0	copy fasta	ABRA	chr8	106754483	106775244
ABRA_chr8_106754483_106775244	0/0	t0011	1609	1	0	0	1	0	0	copy fasta	ABRA	chr8	106754483	106775244
ABR_chr17_998519_1184981	0/1	t0001	2814	56	8	20	16	2	9	copy fasta	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	t0002	2816	28	0	7	15	1	5	copy fasta	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	t0003	2816	25	4	11	7	3	0	copy fasta	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	t0004	2816	21	0	6	13	1	1	copy fasta	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	t0005	2814	20	5	4	10	1	0	copy fasta	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	t0006	2816	18	1	2	9	2	4	copy fasta	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	t0007	2816	13	3	4	6	0	0	copy fasta	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	t0008	2816	11	7	2	1	0	1	copy fasta	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	t0009	2814	11	2	2	6	0	1	copy fasta	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	t0010	2816	9	0	1	8	0	0	copy fasta	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	t0011	2816	7	5	0	1	1	0	copy fasta	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	t0012	2816	5	3	0	2	0	0	copy fasta	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	t0013	2816	4	0	0	4	0	0	copy fasta	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	t0014	2816	4	4	0	0	0	0	copy fasta	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	t0015	2816	4	0	0	4	0	0	copy fasta	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	t0016	2819	3	3	0	0	0	0	copy fasta	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	t0017	2816	3	3	0	0	0	0	copy fasta	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	t0018	2816	3	3	0	0	0	0	copy fasta	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	t0019	2816	3	0	0	1	0	2	copy fasta	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	t0020	2814	3	0	1	1	0	1	copy fasta	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	t0021	2816	3	2	0	1	0	0	copy fasta	ABR	chr17	998519	1184981