Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARL3_chr10_102668731_102719397	0/0	t0041	3285	1	0	0	0	0	1	copy fasta	ARL3	chr10	102668731	102719397
ARL3_chr10_102668731_102719397	0/0	t0042	3285	1	0	0	0	1	0	copy fasta	ARL3	chr10	102668731	102719397
ARL3_chr10_102668731_102719397	0/0	t0043	3285	1	0	1	0	0	0	copy fasta	ARL3	chr10	102668731	102719397
ARL3_chr10_102668731_102719397	0/0	t0044	3286	1	0	1	0	0	0	copy fasta	ARL3	chr10	102668731	102719397
ARL3_chr10_102668731_102719397	0/0	t0045	3285	1	0	0	1	0	0	copy fasta	ARL3	chr10	102668731	102719397
ARL3_chr10_102668731_102719397	0/0	t0046	3283	1	0	0	1	0	0	copy fasta	ARL3	chr10	102668731	102719397
ARL4A_chr7_12682633_12695958	1/0	t0001	2287	156	9	31	89	7	19	copy fasta	ARL4A	chr7	12682633	12695958
ARL4A_chr7_12682633_12695958	0/0	t0002	2287	47	8	5	27	3	4	copy fasta	ARL4A	chr7	12682633	12695958
ARL4A_chr7_12682633_12695958	0/0	t0003	2288	32	0	5	26	1	0	copy fasta	ARL4A	chr7	12682633	12695958
ARL4A_chr7_12682633_12695958	0/1	t0004	2287	25	2	6	5	2	9	copy fasta	ARL4A	chr7	12682633	12695958
ARL4A_chr7_12682633_12695958	0/0	t0005	2288	20	18	2	0	0	0	copy fasta	ARL4A	chr7	12682633	12695958
ARL4A_chr7_12682633_12695958	0/0	t0006	2288	18	2	1	11	0	4	copy fasta	ARL4A	chr7	12682633	12695958
ARL4A_chr7_12682633_12695958	0/0	t0007	2287	14	1	4	2	2	5	copy fasta	ARL4A	chr7	12682633	12695958
ARL4A_chr7_12682633_12695958	0/0	t0008	2288	11	3	6	0	2	0	copy fasta	ARL4A	chr7	12682633	12695958
ARL4A_chr7_12682633_12695958	0/0	t0009	2287	10	9	1	0	0	0	copy fasta	ARL4A	chr7	12682633	12695958
ARL4A_chr7_12682633_12695958	0/0	t0010	2287	10	0	0	10	0	0	copy fasta	ARL4A	chr7	12682633	12695958
ARL4A_chr7_12682633_12695958	0/0	t0011	2287	9	8	1	0	0	0	copy fasta	ARL4A	chr7	12682633	12695958
ARL4A_chr7_12682633_12695958	0/0	t0012	2288	7	0	0	7	0	0	copy fasta	ARL4A	chr7	12682633	12695958
ARL4A_chr7_12682633_12695958	0/0	t0013	2287	7	7	0	0	0	0	copy fasta	ARL4A	chr7	12682633	12695958
ARL4A_chr7_12682633_12695958	0/0	t0014	2287	7	7	0	0	0	0	copy fasta	ARL4A	chr7	12682633	12695958
ARL4A_chr7_12682633_12695958	0/0	t0015	2289	6	6	0	0	0	0	copy fasta	ARL4A	chr7	12682633	12695958
ARL4A_chr7_12682633_12695958	0/0	t0016	2288	6	5	1	0	0	0	copy fasta	ARL4A	chr7	12682633	12695958
ARL4A_chr7_12682633_12695958	0/0	t0017	2287	5	3	2	0	0	0	copy fasta	ARL4A	chr7	12682633	12695958
ARL4A_chr7_12682633_12695958	0/0	t0018	2287	4	0	4	0	0	0	copy fasta	ARL4A	chr7	12682633	12695958
ARL4A_chr7_12682633_12695958	0/0	t0019	2287	3	2	1	0	0	0	copy fasta	ARL4A	chr7	12682633	12695958
ARL4A_chr7_12682633_12695958	0/0	t0020	2288	2	0	0	2	0	0	copy fasta	ARL4A	chr7	12682633	12695958
ARL4A_chr7_12682633_12695958	0/0	t0021	2288	2	2	0	0	0	0	copy fasta	ARL4A	chr7	12682633	12695958
ARL4A_chr7_12682633_12695958	0/0	t0022	2287	2	0	1	0	0	1	copy fasta	ARL4A	chr7	12682633	12695958
ARL4A_chr7_12682633_12695958	0/0	t0023	2287	2	0	0	2	0	0	copy fasta	ARL4A	chr7	12682633	12695958
ARL4A_chr7_12682633_12695958	0/0	t0024	2288	2	1	0	1	0	0	copy fasta	ARL4A	chr7	12682633	12695958
ARL4A_chr7_12682633_12695958	0/0	t0025	2287	1	1	0	0	0	0	copy fasta	ARL4A	chr7	12682633	12695958
ARL4A_chr7_12682633_12695958	0/0	t0026	2287	1	0	0	0	1	0	copy fasta	ARL4A	chr7	12682633	12695958
ARL4A_chr7_12682633_12695958	0/0	t0027	2287	1	1	0	0	0	0	copy fasta	ARL4A	chr7	12682633	12695958
ARL4A_chr7_12682633_12695958	0/0	t0028	2288	1	0	1	0	0	0	copy fasta	ARL4A	chr7	12682633	12695958
ARL4A_chr7_12682633_12695958	0/0	t0029	2288	1	1	0	0	0	0	copy fasta	ARL4A	chr7	12682633	12695958
ARL4A_chr7_12682633_12695958	0/0	t0030	2288	1	1	0	0	0	0	copy fasta	ARL4A	chr7	12682633	12695958
ARL4A_chr7_12682633_12695958	0/0	t0031	2288	1	0	1	0	0	0	copy fasta	ARL4A	chr7	12682633	12695958
ARL4A_chr7_12682633_12695958	0/0	t0032	2288	1	0	0	1	0	0	copy fasta	ARL4A	chr7	12682633	12695958
ARL4A_chr7_12682633_12695958	0/0	t0033	2287	1	0	0	0	0	1	copy fasta	ARL4A	chr7	12682633	12695958
ARL4A_chr7_12682633_12695958	0/0	t0034	2288	1	0	0	1	0	0	copy fasta	ARL4A	chr7	12682633	12695958
ARL4A_chr7_12682633_12695958	0/0	t0035	2287	1	0	0	1	0	0	copy fasta	ARL4A	chr7	12682633	12695958
ARL4A_chr7_12682633_12695958	0/0	t0036	2288	1	0	0	1	0	0	copy fasta	ARL4A	chr7	12682633	12695958
ARL4A_chr7_12682633_12695958	0/0	t0037	2287	1	1	0	0	0	0	copy fasta	ARL4A	chr7	12682633	12695958
ARL4A_chr7_12682633_12695958	0/0	t0038	2289	1	1	0	0	0	0	copy fasta	ARL4A	chr7	12682633	12695958
ARL4A_chr7_12682633_12695958	0/0	t0039	2287	1	0	1	0	0	0	copy fasta	ARL4A	chr7	12682633	12695958
ARL4A_chr7_12682633_12695958	0/0	t0040	2287	1	0	0	1	0	0	copy fasta	ARL4A	chr7	12682633	12695958
ARL4A_chr7_12682633_12695958	0/0	t0041	2287	1	0	0	1	0	0	copy fasta	ARL4A	chr7	12682633	12695958
ARL4A_chr7_12682633_12695958	0/0	t0042	2287	1	0	0	0	0	1	copy fasta	ARL4A	chr7	12682633	12695958
ARL4A_chr7_12682633_12695958	0/0	t0043	2288	1	1	0	0	0	0	copy fasta	ARL4A	chr7	12682633	12695958
ARL4A_chr7_12682633_12695958	0/0	t0044	2287	1	0	0	0	0	1	copy fasta	ARL4A	chr7	12682633	12695958