JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NEPRO_chr3_112997444_113024671	0/0	t0021	3115	2	1	1	0	0	0	copy fasta	NEPRO	chr3	112997444	113024671
NEPRO_chr3_112997444_113024671	0/0	t0022	3116	2	2	0	0	0	0	copy fasta	NEPRO	chr3	112997444	113024671
NEPRO_chr3_112997444_113024671	0/0	t0023	3112	2	0	0	2	0	0	copy fasta	NEPRO	chr3	112997444	113024671
NEPRO_chr3_112997444_113024671	0/0	t0024	3112	1	1	0	0	0	0	copy fasta	NEPRO	chr3	112997444	113024671
NEPRO_chr3_112997444_113024671	0/0	t0025	3107	1	1	0	0	0	0	copy fasta	NEPRO	chr3	112997444	113024671
NEPRO_chr3_112997444_113024671	0/0	t0026	3117	1	1	0	0	0	0	copy fasta	NEPRO	chr3	112997444	113024671
NEPRO_chr3_112997444_113024671	0/0	t0027	3117	1	0	0	1	0	0	copy fasta	NEPRO	chr3	112997444	113024671
NEPRO_chr3_112997444_113024671	0/0	t0028	3115	1	1	0	0	0	0	copy fasta	NEPRO	chr3	112997444	113024671
NEPRO_chr3_112997444_113024671	0/0	t0029	3115	1	1	0	0	0	0	copy fasta	NEPRO	chr3	112997444	113024671
NEPRO_chr3_112997444_113024671	0/0	t0030	3114	1	1	0	0	0	0	copy fasta	NEPRO	chr3	112997444	113024671
NEPRO_chr3_112997444_113024671	0/0	t0031	3106	1	1	0	0	0	0	copy fasta	NEPRO	chr3	112997444	113024671
NEPRO_chr3_112997444_113024671	0/0	t0032	3113	1	0	0	1	0	0	copy fasta	NEPRO	chr3	112997444	113024671
NEPRO_chr3_112997444_113024671	0/0	t0033	3112	1	0	0	0	0	1	copy fasta	NEPRO	chr3	112997444	113024671
NES_chr1_156663763_156682407	1/1	t0001	703	326	81	72	130	12	29	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/0	t0002	703	97	3	14	59	6	15	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/0	t0003	703	6	6	0	0	0	0	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/0	t0004	703	6	6	0	0	0	0	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/0	t0005	703	2	2	0	0	0	0	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/0	t0006	703	1	0	0	1	0	0	copy fasta	NES	chr1	156663763	156682407
NET1_chr10_5407557_5464056	0/1	t0001	2199	178	31	30	92	8	16	copy fasta	NET1	chr10	5407557	5464056
NET1_chr10_5407557_5464056	0/0	t0002	2199	88	15	16	36	3	18	copy fasta	NET1	chr10	5407557	5464056
NET1_chr10_5407557_5464056	0/0	t0003	2199	26	5	3	18	0	0	copy fasta	NET1	chr10	5407557	5464056
NET1_chr10_5407557_5464056	0/0	t0004	2201	19	12	3	0	1	3	copy fasta	NET1	chr10	5407557	5464056
NET1_chr10_5407557_5464056	0/0	t0005	2203	18	0	1	15	0	2	copy fasta	NET1	chr10	5407557	5464056
NET1_chr10_5407557_5464056	0/0	t0006	2200	18	0	2	16	0	0	copy fasta	NET1	chr10	5407557	5464056
NET1_chr10_5407557_5464056	1/0	t0007	2199	6	5	0	0	0	0	copy fasta	NET1	chr10	5407557	5464056
NET1_chr10_5407557_5464056	0/0	t0008	2199	5	5	0	0	0	0	copy fasta	NET1	chr10	5407557	5464056
NET1_chr10_5407557_5464056	0/0	t0009	2203	4	0	3	0	0	1	copy fasta	NET1	chr10	5407557	5464056
NET1_chr10_5407557_5464056	0/0	t0010	2199	3	0	0	3	0	0	copy fasta	NET1	chr10	5407557	5464056
NET1_chr10_5407557_5464056	0/0	t0011	2199	2	1	1	0	0	0	copy fasta	NET1	chr10	5407557	5464056
NET1_chr10_5407557_5464056	0/0	t0012	2199	2	0	0	0	2	0	copy fasta	NET1	chr10	5407557	5464056
NET1_chr10_5407557_5464056	0/0	t0013	2203	2	0	2	0	0	0	copy fasta	NET1	chr10	5407557	5464056
NET1_chr10_5407557_5464056	0/0	t0014	2199	1	1	0	0	0	0	copy fasta	NET1	chr10	5407557	5464056
NET1_chr10_5407557_5464056	0/0	t0015	2203	1	0	0	1	0	0	copy fasta	NET1	chr10	5407557	5464056
NET1_chr10_5407557_5464056	0/0	t0016	2199	1	0	0	1	0	0	copy fasta	NET1	chr10	5407557	5464056
NET1_chr10_5407557_5464056	0/0	t0017	2199	1	1	0	0	0	0	copy fasta	NET1	chr10	5407557	5464056
NET1_chr10_5407557_5464056	0/0	t0018	2199	1	0	0	1	0	0	copy fasta	NET1	chr10	5407557	5464056
NET1_chr10_5407557_5464056	0/0	t0019	2199	1	1	0	0	0	0	copy fasta	NET1	chr10	5407557	5464056
NET1_chr10_5407557_5464056	0/0	t0020	2199	1	0	1	0	0	0	copy fasta	NET1	chr10	5407557	5464056
NET1_chr10_5407557_5464056	0/0	t0021	2199	1	1	0	0	0	0	copy fasta	NET1	chr10	5407557	5464056
NET1_chr10_5407557_5464056	0/0	t0022	2199	1	0	0	1	0	0	copy fasta	NET1	chr10	5407557	5464056
NETO1_chr18_72738756_72872987	0/0	t0001	5120	75	8	12	41	5	9	copy fasta	NETO1	chr18	72738756	72872987
NETO1_chr18_72738756_72872987	0/1	t0002	5119	66	1	10	47	1	6	copy fasta	NETO1	chr18	72738756	72872987
NETO1_chr18_72738756_72872987	0/0	t0003	5120	52	23	11	14	2	2	copy fasta	NETO1	chr18	72738756	72872987
NETO1_chr18_72738756_72872987	1/0	t0004	5120	39	12	1	22	0	3	copy fasta	NETO1	chr18	72738756	72872987
NETO1_chr18_72738756_72872987	0/0	t0005	5120	19	5	11	0	1	2	copy fasta	NETO1	chr18	72738756	72872987
NETO1_chr18_72738756_72872987	0/0	t0006	5120	11	8	2	0	0	1	copy fasta	NETO1	chr18	72738756	72872987
NETO1_chr18_72738756_72872987	0/0	t0007	5120	10	3	0	2	0	5	copy fasta	NETO1	chr18	72738756	72872987
NETO1_chr18_72738756_72872987	0/0	t0008	5120	10	1	6	0	0	3	copy fasta	NETO1	chr18	72738756	72872987
NETO1_chr18_72738756_72872987	0/0	t0009	5120	8	0	5	0	0	3	copy fasta	NETO1	chr18	72738756	72872987