JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NETO1_chr18_72738756_72872987	0/0	t0010	5120	5	0	0	5	0	0	copy fasta	NETO1	chr18	72738756	72872987
NETO1_chr18_72738756_72872987	0/0	t0011	5120	5	5	0	0	0	0	copy fasta	NETO1	chr18	72738756	72872987
NETO1_chr18_72738756_72872987	0/0	t0012	5120	4	4	0	0	0	0	copy fasta	NETO1	chr18	72738756	72872987
NETO1_chr18_72738756_72872987	0/0	t0013	5120	3	0	0	3	0	0	copy fasta	NETO1	chr18	72738756	72872987
NETO1_chr18_72738756_72872987	0/0	t0014	5120	3	3	0	0	0	0	copy fasta	NETO1	chr18	72738756	72872987
NETO1_chr18_72738756_72872987	0/0	t0015	5120	2	2	0	0	0	0	copy fasta	NETO1	chr18	72738756	72872987
NETO1_chr18_72738756_72872987	0/0	t0016	5120	2	2	0	0	0	0	copy fasta	NETO1	chr18	72738756	72872987
NETO1_chr18_72738756_72872987	0/0	t0017	5120	2	0	0	0	2	0	copy fasta	NETO1	chr18	72738756	72872987
NETO1_chr18_72738756_72872987	0/0	t0018	5120	2	2	0	0	0	0	copy fasta	NETO1	chr18	72738756	72872987
NETO1_chr18_72738756_72872987	0/0	t0019	5120	2	0	2	0	0	0	copy fasta	NETO1	chr18	72738756	72872987
NETO1_chr18_72738756_72872987	0/0	t0020	5120	2	2	0	0	0	0	copy fasta	NETO1	chr18	72738756	72872987
NETO1_chr18_72738756_72872987	0/0	t0021	5120	1	0	0	1	0	0	copy fasta	NETO1	chr18	72738756	72872987
NETO1_chr18_72738756_72872987	0/0	t0022	5120	1	1	0	0	0	0	copy fasta	NETO1	chr18	72738756	72872987
NETO1_chr18_72738756_72872987	0/0	t0023	5120	1	1	0	0	0	0	copy fasta	NETO1	chr18	72738756	72872987
NETO1_chr18_72738756_72872987	0/0	t0024	5120	1	1	0	0	0	0	copy fasta	NETO1	chr18	72738756	72872987
NETO1_chr18_72738756_72872987	0/0	t0025	5120	1	1	0	0	0	0	copy fasta	NETO1	chr18	72738756	72872987
NETO1_chr18_72738756_72872987	0/0	t0026	5120	1	1	0	0	0	0	copy fasta	NETO1	chr18	72738756	72872987
NETO1_chr18_72738756_72872987	0/0	t0027	5120	1	0	0	0	0	1	copy fasta	NETO1	chr18	72738756	72872987
NETO1_chr18_72738756_72872987	0/0	t0028	5120	1	0	0	1	0	0	copy fasta	NETO1	chr18	72738756	72872987
NETO1_chr18_72738756_72872987	0/0	t0029	5120	1	0	0	1	0	0	copy fasta	NETO1	chr18	72738756	72872987
NETO1_chr18_72738756_72872987	0/0	t0030	5120	1	1	0	0	0	0	copy fasta	NETO1	chr18	72738756	72872987
NETO1_chr18_72738756_72872987	0/0	t0031	5120	1	0	0	1	0	0	copy fasta	NETO1	chr18	72738756	72872987
NETO1_chr18_72738756_72872987	0/0	t0032	5120	1	0	0	0	0	1	copy fasta	NETO1	chr18	72738756	72872987
NETO1_chr18_72738756_72872987	0/0	t0033	5120	1	1	0	0	0	0	copy fasta	NETO1	chr18	72738756	72872987
NETO1_chr18_72738756_72872987	0/0	t0034	5120	1	0	0	1	0	0	copy fasta	NETO1	chr18	72738756	72872987
NETO1_chr18_72738756_72872987	0/0	t0035	5119	1	0	1	0	0	0	copy fasta	NETO1	chr18	72738756	72872987
NETO1_chr18_72738756_72872987	0/0	t0036	5119	1	0	0	0	1	0	copy fasta	NETO1	chr18	72738756	72872987
NETO1_chr18_72738756_72872987	0/0	t0037	5119	1	0	1	0	0	0	copy fasta	NETO1	chr18	72738756	72872987
NETO1_chr18_72738756_72872987	0/0	t0038	5119	1	0	0	0	0	1	copy fasta	NETO1	chr18	72738756	72872987
NETO1_chr18_72738756_72872987	0/0	t0039	5119	1	0	0	1	0	0	copy fasta	NETO1	chr18	72738756	72872987
NETO1_chr18_72738756_72872987	0/0	t0040	5120	1	0	0	0	1	0	copy fasta	NETO1	chr18	72738756	72872987
NETO1_chr18_72738756_72872987	0/0	t0041	5120	1	1	0	0	0	0	copy fasta	NETO1	chr18	72738756	72872987
NETO1_chr18_72738756_72872987	0/0	t0042	5120	1	0	1	0	0	0	copy fasta	NETO1	chr18	72738756	72872987
NETO1_chr18_72738756_72872987	0/0	t0043	5120	1	0	1	0	0	0	copy fasta	NETO1	chr18	72738756	72872987
NETO1_chr18_72738756_72872987	0/0	t0044	5120	1	0	0	0	1	0	copy fasta	NETO1	chr18	72738756	72872987
NETO1_chr18_72738756_72872987	0/0	t0045	5119	1	0	0	0	0	1	copy fasta	NETO1	chr18	72738756	72872987
NETO1_chr18_72738756_72872987	0/0	t0046	5120	1	1	0	0	0	0	copy fasta	NETO1	chr18	72738756	72872987
NETO2_chr16_47072703_47148945	0/0	t0001	5852	88	26	19	26	5	12	copy fasta	NETO2	chr16	47072703	47148945
NETO2_chr16_47072703_47148945	0/0	t0002	5857	22	18	4	0	0	0	copy fasta	NETO2	chr16	47072703	47148945
NETO2_chr16_47072703_47148945	0/0	t0003	5857	8	8	0	0	0	0	copy fasta	NETO2	chr16	47072703	47148945
NETO2_chr16_47072703_47148945	0/0	t0004	5857	5	5	0	0	0	0	copy fasta	NETO2	chr16	47072703	47148945
NETO2_chr16_47072703_47148945	0/0	t0005	5857	4	4	0	0	0	0	copy fasta	NETO2	chr16	47072703	47148945
NETO2_chr16_47072703_47148945	0/0	t0006	5857	4	4	0	0	0	0	copy fasta	NETO2	chr16	47072703	47148945
NETO2_chr16_47072703_47148945	0/0	t0007	5857	4	4	0	0	0	0	copy fasta	NETO2	chr16	47072703	47148945
NETO2_chr16_47072703_47148945	0/1	t0008	5852	3	0	2	0	0	0	copy fasta	NETO2	chr16	47072703	47148945
NETO2_chr16_47072703_47148945	0/0	t0009	5852	3	0	0	0	0	3	copy fasta	NETO2	chr16	47072703	47148945
NETO2_chr16_47072703_47148945	0/0	t0010	5852	3	0	0	0	0	3	copy fasta	NETO2	chr16	47072703	47148945
NETO2_chr16_47072703_47148945	0/0	t0011	5857	3	3	0	0	0	0	copy fasta	NETO2	chr16	47072703	47148945
NETO2_chr16_47072703_47148945	0/0	t0012	5848	2	2	0	0	0	0	copy fasta	NETO2	chr16	47072703	47148945
NETO2_chr16_47072703_47148945	0/0	t0013	5852	2	2	0	0	0	0	copy fasta	NETO2	chr16	47072703	47148945