JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NETO2_chr16_47072703_47148945	0/0	t0014	5857	2	2	0	0	0	0	copy fasta	NETO2	chr16	47072703	47148945
NETO2_chr16_47072703_47148945	0/0	t0015	5852	1	0	0	0	0	1	copy fasta	NETO2	chr16	47072703	47148945
NETO2_chr16_47072703_47148945	0/0	t0016	5852	1	0	0	1	0	0	copy fasta	NETO2	chr16	47072703	47148945
NETO2_chr16_47072703_47148945	0/0	t0017	5857	1	1	0	0	0	0	copy fasta	NETO2	chr16	47072703	47148945
NETO2_chr16_47072703_47148945	0/0	t0018	5852	1	0	1	0	0	0	copy fasta	NETO2	chr16	47072703	47148945
NETO2_chr16_47072703_47148945	0/0	t0019	5852	1	0	0	1	0	0	copy fasta	NETO2	chr16	47072703	47148945
NETO2_chr16_47072703_47148945	0/0	t0020	5852	1	0	1	0	0	0	copy fasta	NETO2	chr16	47072703	47148945
NETO2_chr16_47072703_47148945	1/0	t0021	5852	1	0	0	0	0	0	copy fasta	NETO2	chr16	47072703	47148945
NETO2_chr16_47072703_47148945	0/0	t0022	5852	1	1	0	0	0	0	copy fasta	NETO2	chr16	47072703	47148945
NETO2_chr16_47072703_47148945	0/0	t0023	5852	1	0	1	0	0	0	copy fasta	NETO2	chr16	47072703	47148945
NETO2_chr16_47072703_47148945	0/0	t0024	5857	1	0	1	0	0	0	copy fasta	NETO2	chr16	47072703	47148945
NETO2_chr16_47072703_47148945	0/0	t0025	5857	1	0	1	0	0	0	copy fasta	NETO2	chr16	47072703	47148945
NETO2_chr16_47072703_47148945	0/0	t0026	5857	1	1	0	0	0	0	copy fasta	NETO2	chr16	47072703	47148945
NETO2_chr16_47072703_47148945	0/0	t0027	5852	1	1	0	0	0	0	copy fasta	NETO2	chr16	47072703	47148945
NETO2_chr16_47072703_47148945	0/0	t0028	5852	1	0	0	0	0	1	copy fasta	NETO2	chr16	47072703	47148945
NETO2_chr16_47072703_47148945	0/0	t0029	5852	1	0	0	0	1	0	copy fasta	NETO2	chr16	47072703	47148945
NEU1_chr6_31852659_31867821	0/0	t0001	2106	202	63	41	68	7	23	copy fasta	NEU1	chr6	31852659	31867821
NEU1_chr6_31852659_31867821	0/1	t0002	2106	127	8	27	71	7	13	copy fasta	NEU1	chr6	31852659	31867821
NEU1_chr6_31852659_31867821	0/0	t0003	2106	15	0	4	10	1	0	copy fasta	NEU1	chr6	31852659	31867821
NEU1_chr6_31852659_31867821	0/0	t0004	2106	15	0	0	14	0	1	copy fasta	NEU1	chr6	31852659	31867821
NEU1_chr6_31852659_31867821	0/0	t0005	2106	14	2	0	12	0	0	copy fasta	NEU1	chr6	31852659	31867821
NEU1_chr6_31852659_31867821	0/0	t0006	2107	12	8	0	2	1	1	copy fasta	NEU1	chr6	31852659	31867821
NEU1_chr6_31852659_31867821	0/0	t0007	2106	7	2	0	1	0	4	copy fasta	NEU1	chr6	31852659	31867821
NEU1_chr6_31852659_31867821	0/0	t0008	2106	5	1	3	0	0	1	copy fasta	NEU1	chr6	31852659	31867821
NEU1_chr6_31852659_31867821	0/0	t0009	2107	5	0	3	0	2	0	copy fasta	NEU1	chr6	31852659	31867821
NEU1_chr6_31852659_31867821	0/0	t0010	2106	3	0	0	0	0	3	copy fasta	NEU1	chr6	31852659	31867821
NEU1_chr6_31852659_31867821	0/0	t0011	2106	3	3	0	0	0	0	copy fasta	NEU1	chr6	31852659	31867821
NEU1_chr6_31852659_31867821	0/0	t0012	2107	2	1	1	0	0	0	copy fasta	NEU1	chr6	31852659	31867821
NEU1_chr6_31852659_31867821	0/0	t0013	2108	1	1	0	0	0	0	copy fasta	NEU1	chr6	31852659	31867821
NEU1_chr6_31852659_31867821	0/0	t0014	2106	1	0	0	1	0	0	copy fasta	NEU1	chr6	31852659	31867821
NEU1_chr6_31852659_31867821	0/0	t0015	2106	1	0	0	1	0	0	copy fasta	NEU1	chr6	31852659	31867821
NEU1_chr6_31852659_31867821	0/0	t0016	2106	1	1	0	0	0	0	copy fasta	NEU1	chr6	31852659	31867821
NEU1_chr6_31852659_31867821	0/0	t0017	2106	1	1	0	0	0	0	copy fasta	NEU1	chr6	31852659	31867821
NEU1_chr6_31852659_31867821	0/0	t0018	2106	1	0	0	1	0	0	copy fasta	NEU1	chr6	31852659	31867821
NEU1_chr6_31852659_31867821	0/0	t0019	2106	1	0	1	0	0	0	copy fasta	NEU1	chr6	31852659	31867821
NEU1_chr6_31852659_31867821	0/0	t0020	2106	1	1	0	0	0	0	copy fasta	NEU1	chr6	31852659	31867821
NEU1_chr6_31852659_31867821	0/0	t0021	2106	1	0	0	1	0	0	copy fasta	NEU1	chr6	31852659	31867821
NEU3_chr11_74983933_75015907	0/1	t0001	4545	102	2	24	65	4	6	copy fasta	NEU3	chr11	74983933	75015907
NEU3_chr11_74983933_75015907	0/0	t0002	4545	95	8	18	48	6	15	copy fasta	NEU3	chr11	74983933	75015907
NEU3_chr11_74983933_75015907	0/0	t0003	4544	48	9	8	18	4	9	copy fasta	NEU3	chr11	74983933	75015907
NEU3_chr11_74983933_75015907	1/0	t0004	4544	43	0	1	33	2	6	copy fasta	NEU3	chr11	74983933	75015907
NEU3_chr11_74983933_75015907	0/0	t0005	4543	12	11	1	0	0	0	copy fasta	NEU3	chr11	74983933	75015907
NEU3_chr11_74983933_75015907	0/0	t0006	4543	11	9	0	2	0	0	copy fasta	NEU3	chr11	74983933	75015907
NEU3_chr11_74983933_75015907	0/0	t0007	4543	11	5	6	0	0	0	copy fasta	NEU3	chr11	74983933	75015907
NEU3_chr11_74983933_75015907	0/0	t0008	4545	10	5	4	0	0	1	copy fasta	NEU3	chr11	74983933	75015907
NEU3_chr11_74983933_75015907	0/0	t0009	4545	10	10	0	0	0	0	copy fasta	NEU3	chr11	74983933	75015907
NEU3_chr11_74983933_75015907	0/0	t0010	4545	9	9	0	0	0	0	copy fasta	NEU3	chr11	74983933	75015907
NEU3_chr11_74983933_75015907	0/0	t0011	4545	7	7	0	0	0	0	copy fasta	NEU3	chr11	74983933	75015907
NEU3_chr11_74983933_75015907	0/0	t0012	4545	6	6	0	0	0	0	copy fasta	NEU3	chr11	74983933	75015907
NEU3_chr11_74983933_75015907	0/0	t0013	4543	6	6	0	0	0	0	copy fasta	NEU3	chr11	74983933	75015907