JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NEU3_chr11_74983933_75015907	0/0	t0014	4546	2	0	1	1	0	0	copy fasta	NEU3	chr11	74983933	75015907
NEU3_chr11_74983933_75015907	0/0	t0015	4545	1	0	0	0	0	1	copy fasta	NEU3	chr11	74983933	75015907
NEU3_chr11_74983933_75015907	0/0	t0016	4545	1	0	1	0	0	0	copy fasta	NEU3	chr11	74983933	75015907
NEU3_chr11_74983933_75015907	0/0	t0017	4545	1	1	0	0	0	0	copy fasta	NEU3	chr11	74983933	75015907
NEU3_chr11_74983933_75015907	0/0	t0018	4546	1	1	0	0	0	0	copy fasta	NEU3	chr11	74983933	75015907
NEU3_chr11_74983933_75015907	0/0	t0019	4546	1	1	0	0	0	0	copy fasta	NEU3	chr11	74983933	75015907
NEU3_chr11_74983933_75015907	0/0	t0020	4545	1	0	0	1	0	0	copy fasta	NEU3	chr11	74983933	75015907
NEU3_chr11_74983933_75015907	0/0	t0021	4545	1	1	0	0	0	0	copy fasta	NEU3	chr11	74983933	75015907
NEU3_chr11_74983933_75015907	0/0	t0022	4545	1	1	0	0	0	0	copy fasta	NEU3	chr11	74983933	75015907
NEU3_chr11_74983933_75015907	0/0	t0023	4545	1	1	0	0	0	0	copy fasta	NEU3	chr11	74983933	75015907
NEU3_chr11_74983933_75015907	0/0	t0024	4545	1	0	0	1	0	0	copy fasta	NEU3	chr11	74983933	75015907
NEU3_chr11_74983933_75015907	0/0	t0025	4545	1	0	0	1	0	0	copy fasta	NEU3	chr11	74983933	75015907
NEU3_chr11_74983933_75015907	0/0	t0026	4545	1	1	0	0	0	0	copy fasta	NEU3	chr11	74983933	75015907
NEU3_chr11_74983933_75015907	0/0	t0027	4546	1	0	0	1	0	0	copy fasta	NEU3	chr11	74983933	75015907
NEU3_chr11_74983933_75015907	0/0	t0028	4545	1	1	0	0	0	0	copy fasta	NEU3	chr11	74983933	75015907
NEU3_chr11_74983933_75015907	0/0	t0029	4545	1	0	0	0	0	1	copy fasta	NEU3	chr11	74983933	75015907
NEU3_chr11_74983933_75015907	0/0	t0030	4543	1	1	0	0	0	0	copy fasta	NEU3	chr11	74983933	75015907
NEU3_chr11_74983933_75015907	0/0	t0031	4543	1	0	0	0	0	1	copy fasta	NEU3	chr11	74983933	75015907
NEU3_chr11_74983933_75015907	0/0	t0032	4544	1	0	0	0	0	1	copy fasta	NEU3	chr11	74983933	75015907
NEU3_chr11_74983933_75015907	0/0	t0033	4544	1	0	0	0	0	1	copy fasta	NEU3	chr11	74983933	75015907
NEU3_chr11_74983933_75015907	0/0	t0034	4545	1	0	0	1	0	0	copy fasta	NEU3	chr11	74983933	75015907
NEU3_chr11_74983933_75015907	0/0	t0035	4545	1	1	0	0	0	0	copy fasta	NEU3	chr11	74983933	75015907
NEU3_chr11_74983933_75015907	0/0	t0036	4545	1	1	0	0	0	0	copy fasta	NEU3	chr11	74983933	75015907
NEU4_chr2_241804193_241822413	0/1	t0001	451	207	39	36	106	6	19	copy fasta	NEU4	chr2	241804193	241822413
NEU4_chr2_241804193_241822413	0/0	t0002	451	60	15	15	13	7	10	copy fasta	NEU4	chr2	241804193	241822413
NEU4_chr2_241804193_241822413	0/0	t0003	451	43	24	11	1	2	5	copy fasta	NEU4	chr2	241804193	241822413
NEU4_chr2_241804193_241822413	0/0	t0004	451	3	1	2	0	0	0	copy fasta	NEU4	chr2	241804193	241822413
NEU4_chr2_241804193_241822413	0/0	t0005	451	1	0	0	1	0	0	copy fasta	NEU4	chr2	241804193	241822413
NEU4_chr2_241804193_241822413	0/0	t0006	451	1	0	1	0	0	0	copy fasta	NEU4	chr2	241804193	241822413
NEU4_chr2_241804193_241822413	0/0	t0007	451	1	0	0	1	0	0	copy fasta	NEU4	chr2	241804193	241822413
NEU4_chr2_241804193_241822413	0/0	t0008	451	1	0	1	0	0	0	copy fasta	NEU4	chr2	241804193	241822413
NEU4_chr2_241804193_241822413	0/0	t0009	411	1	0	0	0	1	0	copy fasta	NEU4	chr2	241804193	241822413
NEU4_chr2_241804193_241822413	0/0	t0010	451	1	1	0	0	0	0	copy fasta	NEU4	chr2	241804193	241822413
NEURL1B_chr5_172636263_172696540	1/0	t0001	4760	91	10	22	50	5	3	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1B_chr5_172636263_172696540	0/0	t0002	4761	62	6	12	39	2	3	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1B_chr5_172636263_172696540	0/0	t0003	4765	59	8	9	31	1	10	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1B_chr5_172636263_172696540	0/0	t0004	4763	32	9	9	7	2	5	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1B_chr5_172636263_172696540	0/0	t0005	4760	18	4	1	10	0	3	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1B_chr5_172636263_172696540	0/0	t0006	4761	17	0	3	10	2	2	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1B_chr5_172636263_172696540	0/0	t0007	4765	13	11	2	0	0	0	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1B_chr5_172636263_172696540	0/0	t0008	4760	11	6	1	2	0	2	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1B_chr5_172636263_172696540	0/0	t0009	4761	9	7	0	2	0	0	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1B_chr5_172636263_172696540	0/1	t0010	4764	9	0	5	0	1	2	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1B_chr5_172636263_172696540	0/0	t0011	4761	7	0	0	7	0	0	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1B_chr5_172636263_172696540	0/0	t0012	4760	5	5	0	0	0	0	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1B_chr5_172636263_172696540	0/0	t0013	4764	5	0	1	3	1	0	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1B_chr5_172636263_172696540	0/0	t0014	4740	4	4	0	0	0	0	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1B_chr5_172636263_172696540	0/0	t0015	4765	4	0	2	1	0	1	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1B_chr5_172636263_172696540	0/0	t0016	4761	3	0	2	0	1	0	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1B_chr5_172636263_172696540	0/0	t0017	4764	3	3	0	0	0	0	copy fasta	NEURL1B	chr5	172636263	172696540