JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NEURL1B_chr5_172636263_172696540	0/0	t0018	4760	2	0	0	0	2	0	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1B_chr5_172636263_172696540	0/0	t0019	4759	2	0	0	1	1	0	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1B_chr5_172636263_172696540	0/0	t0020	4760	2	0	0	2	0	0	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1B_chr5_172636263_172696540	0/0	t0021	4760	2	2	0	0	0	0	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1B_chr5_172636263_172696540	0/0	t0022	4760	2	2	0	0	0	0	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1B_chr5_172636263_172696540	0/0	t0023	4765	2	2	0	0	0	0	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1B_chr5_172636263_172696540	0/0	t0024	4764	2	0	2	0	0	0	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1B_chr5_172636263_172696540	0/0	t0025	4760	1	1	0	0	0	0	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1B_chr5_172636263_172696540	0/0	t0026	4760	1	1	0	0	0	0	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1B_chr5_172636263_172696540	0/0	t0027	4760	1	1	0	0	0	0	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1B_chr5_172636263_172696540	0/0	t0028	4761	1	0	1	0	0	0	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1B_chr5_172636263_172696540	0/0	t0029	4760	1	0	1	0	0	0	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1B_chr5_172636263_172696540	0/0	t0030	4761	1	0	0	0	0	1	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1B_chr5_172636263_172696540	0/0	t0031	4761	1	0	0	1	0	0	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1B_chr5_172636263_172696540	0/0	t0032	4759	1	1	0	0	0	0	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1B_chr5_172636263_172696540	0/0	t0033	4759	1	1	0	0	0	0	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1B_chr5_172636263_172696540	0/0	t0034	4761	1	1	0	0	0	0	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1B_chr5_172636263_172696540	0/0	t0035	4761	1	1	0	0	0	0	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1B_chr5_172636263_172696540	0/0	t0036	4761	1	1	0	0	0	0	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1B_chr5_172636263_172696540	0/0	t0037	4760	1	0	0	1	0	0	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1B_chr5_172636263_172696540	0/0	t0038	4760	1	1	0	0	0	0	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1B_chr5_172636263_172696540	0/0	t0039	4760	1	1	0	0	0	0	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1B_chr5_172636263_172696540	0/0	t0040	4760	1	1	0	0	0	0	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1B_chr5_172636263_172696540	0/0	t0041	4760	1	0	0	1	0	0	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1B_chr5_172636263_172696540	0/0	t0042	4765	1	0	0	1	0	0	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1B_chr5_172636263_172696540	0/0	t0043	4765	1	0	0	0	0	1	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1B_chr5_172636263_172696540	0/0	t0044	4765	1	0	0	0	0	1	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1B_chr5_172636263_172696540	0/0	t0045	4764	1	0	1	0	0	0	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1B_chr5_172636263_172696540	0/0	t0046	4765	1	1	0	0	0	0	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1B_chr5_172636263_172696540	0/0	t0047	4766	1	1	0	0	0	0	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1B_chr5_172636263_172696540	0/0	t0048	4765	1	0	0	0	0	1	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1B_chr5_172636263_172696540	0/0	t0049	4765	1	0	0	0	0	1	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1B_chr5_172636263_172696540	0/0	t0050	4761	1	0	0	1	0	0	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1_chr10_103488705_103597546	0/0	t0001	2858	85	6	18	36	3	22	copy fasta	NEURL1	chr10	103488705	103597546
NEURL1_chr10_103488705_103597546	0/0	t0002	2858	46	15	7	21	1	2	copy fasta	NEURL1	chr10	103488705	103597546
NEURL1_chr10_103488705_103597546	0/0	t0003	2858	38	1	11	21	2	3	copy fasta	NEURL1	chr10	103488705	103597546
NEURL1_chr10_103488705_103597546	0/1	t0004	2858	31	1	6	18	0	5	copy fasta	NEURL1	chr10	103488705	103597546
NEURL1_chr10_103488705_103597546	1/0	t0005	2858	18	3	7	0	4	3	copy fasta	NEURL1	chr10	103488705	103597546
NEURL1_chr10_103488705_103597546	0/0	t0006	2858	16	11	3	0	0	2	copy fasta	NEURL1	chr10	103488705	103597546
NEURL1_chr10_103488705_103597546	0/0	t0007	2858	11	10	1	0	0	0	copy fasta	NEURL1	chr10	103488705	103597546
NEURL1_chr10_103488705_103597546	0/0	t0008	2858	8	7	1	0	0	0	copy fasta	NEURL1	chr10	103488705	103597546
NEURL1_chr10_103488705_103597546	0/0	t0009	2858	5	1	4	0	0	0	copy fasta	NEURL1	chr10	103488705	103597546
NEURL1_chr10_103488705_103597546	0/0	t0010	2858	5	4	0	0	1	0	copy fasta	NEURL1	chr10	103488705	103597546
NEURL1_chr10_103488705_103597546	0/0	t0011	2858	5	2	0	0	0	3	copy fasta	NEURL1	chr10	103488705	103597546
NEURL1_chr10_103488705_103597546	0/0	t0012	2855	5	5	0	0	0	0	copy fasta	NEURL1	chr10	103488705	103597546
NEURL1_chr10_103488705_103597546	0/0	t0013	2858	4	1	2	0	1	0	copy fasta	NEURL1	chr10	103488705	103597546
NEURL1_chr10_103488705_103597546	0/0	t0014	2859	4	1	0	3	0	0	copy fasta	NEURL1	chr10	103488705	103597546
NEURL1_chr10_103488705_103597546	0/0	t0015	2858	4	4	0	0	0	0	copy fasta	NEURL1	chr10	103488705	103597546
NEURL1_chr10_103488705_103597546	0/0	t0016	2858	3	3	0	0	0	0	copy fasta	NEURL1	chr10	103488705	103597546
NEURL1_chr10_103488705_103597546	0/0	t0017	2858	3	2	1	0	0	0	copy fasta	NEURL1	chr10	103488705	103597546