JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NEURL1_chr10_103488705_103597546	0/0	t0018	2858	3	3	0	0	0	0	copy fasta	NEURL1	chr10	103488705	103597546
NEURL1_chr10_103488705_103597546	0/0	t0019	2858	2	2	0	0	0	0	copy fasta	NEURL1	chr10	103488705	103597546
NEURL1_chr10_103488705_103597546	0/0	t0020	2859	2	0	1	1	0	0	copy fasta	NEURL1	chr10	103488705	103597546
NEURL1_chr10_103488705_103597546	0/0	t0021	2858	2	0	0	2	0	0	copy fasta	NEURL1	chr10	103488705	103597546
NEURL1_chr10_103488705_103597546	0/0	t0022	2858	1	0	1	0	0	0	copy fasta	NEURL1	chr10	103488705	103597546
NEURL1_chr10_103488705_103597546	0/0	t0023	2858	1	1	0	0	0	0	copy fasta	NEURL1	chr10	103488705	103597546
NEURL1_chr10_103488705_103597546	0/0	t0024	2855	1	1	0	0	0	0	copy fasta	NEURL1	chr10	103488705	103597546
NEURL1_chr10_103488705_103597546	0/0	t0025	2858	1	0	0	0	0	1	copy fasta	NEURL1	chr10	103488705	103597546
NEURL1_chr10_103488705_103597546	0/0	t0026	2858	1	1	0	0	0	0	copy fasta	NEURL1	chr10	103488705	103597546
NEURL1_chr10_103488705_103597546	0/0	t0027	2858	1	0	0	0	0	1	copy fasta	NEURL1	chr10	103488705	103597546
NEURL1_chr10_103488705_103597546	0/0	t0028	2859	1	0	1	0	0	0	copy fasta	NEURL1	chr10	103488705	103597546
NEURL1_chr10_103488705_103597546	0/0	t0029	2858	1	0	0	1	0	0	copy fasta	NEURL1	chr10	103488705	103597546
NEURL1_chr10_103488705_103597546	0/0	t0030	2858	1	0	0	1	0	0	copy fasta	NEURL1	chr10	103488705	103597546
NEURL1_chr10_103488705_103597546	0/0	t0031	2858	1	1	0	0	0	0	copy fasta	NEURL1	chr10	103488705	103597546
NEURL1_chr10_103488705_103597546	0/0	t0032	2858	1	1	0	0	0	0	copy fasta	NEURL1	chr10	103488705	103597546
NEURL1_chr10_103488705_103597546	0/0	t0033	2858	1	1	0	0	0	0	copy fasta	NEURL1	chr10	103488705	103597546
NEURL2_chr20_45883634_45896208	0/1	t0001	342	144	12	35	75	8	13	copy fasta	NEURL2	chr20	45883634	45896208
NEURL2_chr20_45883634_45896208	0/0	t0002	342	130	48	11	61	0	10	copy fasta	NEURL2	chr20	45883634	45896208
NEURL2_chr20_45883634_45896208	1/0	t0003	342	120	31	14	52	7	15	copy fasta	NEURL2	chr20	45883634	45896208
NEURL2_chr20_45883634_45896208	0/0	t0004	342	17	1	0	10	1	5	copy fasta	NEURL2	chr20	45883634	45896208
NEURL2_chr20_45883634_45896208	0/0	t0005	342	9	0	8	0	0	1	copy fasta	NEURL2	chr20	45883634	45896208
NEURL3_chr2_96492646_96510357	1/1	t0001	670	387	88	70	171	14	42	copy fasta	NEURL3	chr2	96492646	96510357
NEURL3_chr2_96492646_96510357	0/0	t0002	670	3	3	0	0	0	0	copy fasta	NEURL3	chr2	96492646	96510357
NEURL3_chr2_96492646_96510357	0/0	t0003	670	2	2	0	0	0	0	copy fasta	NEURL3	chr2	96492646	96510357
NEURL3_chr2_96492646_96510357	0/0	t0004	670	1	1	0	0	0	0	copy fasta	NEURL3	chr2	96492646	96510357
NEURL3_chr2_96492646_96510357	0/0	t0005	670	1	0	0	1	0	0	copy fasta	NEURL3	chr2	96492646	96510357
NEURL4_chr17_7310628_7334335	0/0	t0001	519	325	57	67	161	7	33	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	1/1	t0002	519	81	35	15	17	3	9	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	t0003	519	1	1	0	0	0	0	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	t0004	519	1	1	0	0	0	0	copy fasta	NEURL4	chr17	7310628	7334335
NEUROD1_chr2_181671467_181685517	0/0	t0001	1423	61	8	11	29	4	9	copy fasta	NEUROD1	chr2	181671467	181685517
NEUROD1_chr2_181671467_181685517	0/0	t0002	1425	35	0	8	23	2	2	copy fasta	NEUROD1	chr2	181671467	181685517
NEUROD1_chr2_181671467_181685517	0/0	t0003	1422	35	3	12	11	2	7	copy fasta	NEUROD1	chr2	181671467	181685517
NEUROD1_chr2_181671467_181685517	0/0	t0004	1424	34	3	2	25	0	4	copy fasta	NEUROD1	chr2	181671467	181685517
NEUROD1_chr2_181671467_181685517	0/0	t0005	1426	25	1	6	17	0	1	copy fasta	NEUROD1	chr2	181671467	181685517
NEUROD1_chr2_181671467_181685517	0/0	t0006	1417	25	23	2	0	0	0	copy fasta	NEUROD1	chr2	181671467	181685517
NEUROD1_chr2_181671467_181685517	0/0	t0007	1418	24	14	4	5	0	1	copy fasta	NEUROD1	chr2	181671467	181685517
NEUROD1_chr2_181671467_181685517	0/0	t0008	1427	23	2	7	7	2	5	copy fasta	NEUROD1	chr2	181671467	181685517
NEUROD1_chr2_181671467_181685517	0/0	t0009	1419	18	8	8	1	1	0	copy fasta	NEUROD1	chr2	181671467	181685517
NEUROD1_chr2_181671467_181685517	0/1	t0010	1428	16	4	4	4	3	0	copy fasta	NEUROD1	chr2	181671467	181685517
NEUROD1_chr2_181671467_181685517	0/0	t0011	1427	13	1	1	10	0	1	copy fasta	NEUROD1	chr2	181671467	181685517
NEUROD1_chr2_181671467_181685517	1/0	t0012	1423	10	2	3	2	1	1	copy fasta	NEUROD1	chr2	181671467	181685517
NEUROD1_chr2_181671467_181685517	0/0	t0013	1413	8	0	0	6	0	2	copy fasta	NEUROD1	chr2	181671467	181685517
NEUROD1_chr2_181671467_181685517	0/0	t0014	1412	8	0	0	7	0	1	copy fasta	NEUROD1	chr2	181671467	181685517
NEUROD1_chr2_181671467_181685517	0/0	t0015	1429	8	7	1	0	0	0	copy fasta	NEUROD1	chr2	181671467	181685517
NEUROD1_chr2_181671467_181685517	0/0	t0016	1420	6	5	0	1	0	0	copy fasta	NEUROD1	chr2	181671467	181685517
NEUROD1_chr2_181671467_181685517	0/0	t0017	1426	5	0	3	1	0	1	copy fasta	NEUROD1	chr2	181671467	181685517
NEUROD1_chr2_181671467_181685517	0/0	t0018	1421	4	2	0	1	0	1	copy fasta	NEUROD1	chr2	181671467	181685517
NEUROD1_chr2_181671467_181685517	0/0	t0019	1436	3	0	0	3	0	0	copy fasta	NEUROD1	chr2	181671467	181685517
NEUROD1_chr2_181671467_181685517	0/0	t0020	1420	3	3	0	0	0	0	copy fasta	NEUROD1	chr2	181671467	181685517