JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NEUROD1_chr2_181671467_181685517	0/0	t0021	1428	2	0	0	2	0	0	copy fasta	NEUROD1	chr2	181671467	181685517
NEUROD1_chr2_181671467_181685517	0/0	t0022	1421	2	2	0	0	0	0	copy fasta	NEUROD1	chr2	181671467	181685517
NEUROD1_chr2_181671467_181685517	0/0	t0023	1423	1	1	0	0	0	0	copy fasta	NEUROD1	chr2	181671467	181685517
NEUROD1_chr2_181671467_181685517	0/0	t0024	1436	1	0	1	0	0	0	copy fasta	NEUROD1	chr2	181671467	181685517
NEUROD1_chr2_181671467_181685517	0/0	t0025	1424	1	0	0	0	0	1	copy fasta	NEUROD1	chr2	181671467	181685517
NEUROD1_chr2_181671467_181685517	0/0	t0026	1423	1	0	0	0	0	1	copy fasta	NEUROD1	chr2	181671467	181685517
NEUROD1_chr2_181671467_181685517	0/0	t0027	1411	1	0	0	1	0	0	copy fasta	NEUROD1	chr2	181671467	181685517
NEUROD1_chr2_181671467_181685517	0/0	t0028	1421	1	1	0	0	0	0	copy fasta	NEUROD1	chr2	181671467	181685517
NEUROD1_chr2_181671467_181685517	0/0	t0029	1423	1	0	1	0	0	0	copy fasta	NEUROD1	chr2	181671467	181685517
NEUROD1_chr2_181671467_181685517	0/0	t0030	1434	1	0	0	0	1	0	copy fasta	NEUROD1	chr2	181671467	181685517
NEUROD1_chr2_181671467_181685517	0/0	t0031	1425	1	0	1	0	0	0	copy fasta	NEUROD1	chr2	181671467	181685517
NEUROD1_chr2_181671467_181685517	0/0	t0032	1424	1	1	0	0	0	0	copy fasta	NEUROD1	chr2	181671467	181685517
NEUROD1_chr2_181671467_181685517	0/0	t0033	1419	1	1	0	0	0	0	copy fasta	NEUROD1	chr2	181671467	181685517
NEUROD1_chr2_181671467_181685517	0/0	t0034	1423	1	0	1	0	0	0	copy fasta	NEUROD1	chr2	181671467	181685517
NEUROD2_chr17_39598768_39612920	0/1	t0001	1880	70	8	16	28	5	12	copy fasta	NEUROD2	chr17	39598768	39612920
NEUROD2_chr17_39598768_39612920	0/0	t0002	1881	61	8	17	21	5	10	copy fasta	NEUROD2	chr17	39598768	39612920
NEUROD2_chr17_39598768_39612920	1/0	t0003	1882	50	17	7	18	2	5	copy fasta	NEUROD2	chr17	39598768	39612920
NEUROD2_chr17_39598768_39612920	0/0	t0004	1883	36	8	7	18	0	3	copy fasta	NEUROD2	chr17	39598768	39612920
NEUROD2_chr17_39598768_39612920	0/0	t0005	1882	27	4	7	12	2	2	copy fasta	NEUROD2	chr17	39598768	39612920
NEUROD2_chr17_39598768_39612920	0/0	t0006	1884	14	0	2	10	0	2	copy fasta	NEUROD2	chr17	39598768	39612920
NEUROD2_chr17_39598768_39612920	0/0	t0007	1879	14	2	4	4	0	4	copy fasta	NEUROD2	chr17	39598768	39612920
NEUROD2_chr17_39598768_39612920	0/0	t0008	1879	13	8	3	1	1	0	copy fasta	NEUROD2	chr17	39598768	39612920
NEUROD2_chr17_39598768_39612920	0/0	t0009	1878	9	9	0	0	0	0	copy fasta	NEUROD2	chr17	39598768	39612920
NEUROD2_chr17_39598768_39612920	0/0	t0010	1881	8	8	0	0	0	0	copy fasta	NEUROD2	chr17	39598768	39612920
NEUROD2_chr17_39598768_39612920	0/0	t0011	1880	7	4	3	0	0	0	copy fasta	NEUROD2	chr17	39598768	39612920
NEUROD2_chr17_39598768_39612920	0/0	t0012	1883	5	0	1	3	0	1	copy fasta	NEUROD2	chr17	39598768	39612920
NEUROD2_chr17_39598768_39612920	0/0	t0013	1880	5	0	2	0	1	2	copy fasta	NEUROD2	chr17	39598768	39612920
NEUROD2_chr17_39598768_39612920	0/0	t0014	1878	3	1	2	0	0	0	copy fasta	NEUROD2	chr17	39598768	39612920
NEUROD2_chr17_39598768_39612920	0/0	t0015	1881	3	0	2	0	0	1	copy fasta	NEUROD2	chr17	39598768	39612920
NEUROD2_chr17_39598768_39612920	0/0	t0016	1882	3	3	0	0	0	0	copy fasta	NEUROD2	chr17	39598768	39612920
NEUROD2_chr17_39598768_39612920	0/0	t0017	1880	3	3	0	0	0	0	copy fasta	NEUROD2	chr17	39598768	39612920
NEUROD2_chr17_39598768_39612920	0/0	t0018	1885	2	0	0	2	0	0	copy fasta	NEUROD2	chr17	39598768	39612920
NEUROD2_chr17_39598768_39612920	0/0	t0019	1884	2	0	0	2	0	0	copy fasta	NEUROD2	chr17	39598768	39612920
NEUROD2_chr17_39598768_39612920	0/0	t0020	1878	2	2	0	0	0	0	copy fasta	NEUROD2	chr17	39598768	39612920
NEUROD2_chr17_39598768_39612920	0/0	t0021	1883	2	0	0	1	0	1	copy fasta	NEUROD2	chr17	39598768	39612920
NEUROD2_chr17_39598768_39612920	0/0	t0022	1881	2	2	0	0	0	0	copy fasta	NEUROD2	chr17	39598768	39612920
NEUROD2_chr17_39598768_39612920	0/0	t0023	1883	1	1	0	0	0	0	copy fasta	NEUROD2	chr17	39598768	39612920
NEUROD2_chr17_39598768_39612920	0/0	t0024	1880	1	0	0	1	0	0	copy fasta	NEUROD2	chr17	39598768	39612920
NEUROD2_chr17_39598768_39612920	0/0	t0025	1883	1	0	0	1	0	0	copy fasta	NEUROD2	chr17	39598768	39612920
NEUROD2_chr17_39598768_39612920	0/0	t0026	1882	1	1	0	0	0	0	copy fasta	NEUROD2	chr17	39598768	39612920
NEUROD2_chr17_39598768_39612920	0/0	t0027	1882	1	0	0	1	0	0	copy fasta	NEUROD2	chr17	39598768	39612920
NEUROD2_chr17_39598768_39612920	0/0	t0028	1880	1	1	0	0	0	0	copy fasta	NEUROD2	chr17	39598768	39612920
NEUROD2_chr17_39598768_39612920	0/0	t0029	1878	1	0	0	0	0	1	copy fasta	NEUROD2	chr17	39598768	39612920
NEUROD2_chr17_39598768_39612920	0/0	t0030	1870	1	0	1	0	0	0	copy fasta	NEUROD2	chr17	39598768	39612920
NEUROD2_chr17_39598768_39612920	0/0	t0031	1884	1	0	0	1	0	0	copy fasta	NEUROD2	chr17	39598768	39612920
NEUROD2_chr17_39598768_39612920	0/0	t0032	1884	1	0	0	1	0	0	copy fasta	NEUROD2	chr17	39598768	39612920
NEUROD2_chr17_39598768_39612920	0/0	t0033	1882	1	0	0	1	0	0	copy fasta	NEUROD2	chr17	39598768	39612920
NEUROD2_chr17_39598768_39612920	0/0	t0034	1881	1	0	0	1	0	0	copy fasta	NEUROD2	chr17	39598768	39612920
NEUROD2_chr17_39598768_39612920	0/0	t0035	1880	1	0	1	0	0	0	copy fasta	NEUROD2	chr17	39598768	39612920
NEUROD2_chr17_39598768_39612920	0/0	t0036	1871	1	1	0	0	0	0	copy fasta	NEUROD2	chr17	39598768	39612920