JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NEUROD2_chr17_39598768_39612920	0/0	t0037	1869	1	0	1	0	0	0	copy fasta	NEUROD2	chr17	39598768	39612920
NEUROD2_chr17_39598768_39612920	0/0	t0038	1884	1	1	0	0	0	0	copy fasta	NEUROD2	chr17	39598768	39612920
NEUROD2_chr17_39598768_39612920	0/0	t0039	1883	1	1	0	0	0	0	copy fasta	NEUROD2	chr17	39598768	39612920
NEUROD2_chr17_39598768_39612920	0/0	t0040	1882	1	1	0	0	0	0	copy fasta	NEUROD2	chr17	39598768	39612920
NEUROD2_chr17_39598768_39612920	0/0	t0041	1880	1	0	0	1	0	0	copy fasta	NEUROD2	chr17	39598768	39612920
NEUROD4_chr12_55014974_55035017	1/1	t0001	2932	216	21	44	110	13	26	copy fasta	NEUROD4	chr12	55014974	55035017
NEUROD4_chr12_55014974_55035017	0/0	t0002	2934	119	31	22	57	2	7	copy fasta	NEUROD4	chr12	55014974	55035017
NEUROD4_chr12_55014974_55035017	0/0	t0003	2931	28	6	7	13	1	1	copy fasta	NEUROD4	chr12	55014974	55035017
NEUROD4_chr12_55014974_55035017	0/0	t0004	2936	14	13	1	0	0	0	copy fasta	NEUROD4	chr12	55014974	55035017
NEUROD4_chr12_55014974_55035017	0/0	t0005	2936	8	5	3	0	0	0	copy fasta	NEUROD4	chr12	55014974	55035017
NEUROD4_chr12_55014974_55035017	0/0	t0006	2932	4	4	0	0	0	0	copy fasta	NEUROD4	chr12	55014974	55035017
NEUROD4_chr12_55014974_55035017	0/0	t0007	2931	3	3	0	0	0	0	copy fasta	NEUROD4	chr12	55014974	55035017
NEUROD4_chr12_55014974_55035017	0/0	t0008	2932	3	3	0	0	0	0	copy fasta	NEUROD4	chr12	55014974	55035017
NEUROD4_chr12_55014974_55035017	0/0	t0009	2931	3	0	0	3	0	0	copy fasta	NEUROD4	chr12	55014974	55035017
NEUROD4_chr12_55014974_55035017	0/0	t0010	2928	2	0	0	2	0	0	copy fasta	NEUROD4	chr12	55014974	55035017
NEUROD4_chr12_55014974_55035017	0/0	t0011	2931	2	0	1	1	0	0	copy fasta	NEUROD4	chr12	55014974	55035017
NEUROD4_chr12_55014974_55035017	0/0	t0012	2930	2	0	0	1	0	1	copy fasta	NEUROD4	chr12	55014974	55035017
NEUROD4_chr12_55014974_55035017	0/0	t0013	2932	2	0	0	0	0	2	copy fasta	NEUROD4	chr12	55014974	55035017
NEUROD4_chr12_55014974_55035017	0/0	t0014	2936	2	0	0	0	0	2	copy fasta	NEUROD4	chr12	55014974	55035017
NEUROD4_chr12_55014974_55035017	0/0	t0015	2936	1	1	0	0	0	0	copy fasta	NEUROD4	chr12	55014974	55035017
NEUROD4_chr12_55014974_55035017	0/0	t0016	2930	1	1	0	0	0	0	copy fasta	NEUROD4	chr12	55014974	55035017
NEUROD4_chr12_55014974_55035017	0/0	t0017	2930	1	1	0	0	0	0	copy fasta	NEUROD4	chr12	55014974	55035017
NEUROD4_chr12_55014974_55035017	0/0	t0018	2932	1	1	0	0	0	0	copy fasta	NEUROD4	chr12	55014974	55035017
NEUROD4_chr12_55014974_55035017	0/0	t0019	2935	1	1	0	0	0	0	copy fasta	NEUROD4	chr12	55014974	55035017
NEUROD4_chr12_55014974_55035017	0/0	t0020	2936	1	0	1	0	0	0	copy fasta	NEUROD4	chr12	55014974	55035017
NEUROD4_chr12_55014974_55035017	0/0	t0021	2932	1	1	0	0	0	0	copy fasta	NEUROD4	chr12	55014974	55035017
NEUROD4_chr12_55014974_55035017	0/0	t0022	2932	1	0	0	1	0	0	copy fasta	NEUROD4	chr12	55014974	55035017
NEUROD4_chr12_55014974_55035017	0/0	t0023	2932	1	1	0	0	0	0	copy fasta	NEUROD4	chr12	55014974	55035017
NEUROD4_chr12_55014974_55035017	0/0	t0024	2932	1	1	0	0	0	0	copy fasta	NEUROD4	chr12	55014974	55035017
NEUROD4_chr12_55014974_55035017	0/0	t0025	2932	1	0	0	1	0	0	copy fasta	NEUROD4	chr12	55014974	55035017
NEUROD4_chr12_55014974_55035017	0/0	t0026	2932	1	0	0	1	0	0	copy fasta	NEUROD4	chr12	55014974	55035017
NEUROD4_chr12_55014974_55035017	0/0	t0027	2931	1	0	0	1	0	0	copy fasta	NEUROD4	chr12	55014974	55035017
NEUROD4_chr12_55014974_55035017	0/0	t0028	2931	1	0	1	0	0	0	copy fasta	NEUROD4	chr12	55014974	55035017
NEUROD4_chr12_55014974_55035017	0/0	t0029	2936	1	0	0	1	0	0	copy fasta	NEUROD4	chr12	55014974	55035017
NEUROD4_chr12_55014974_55035017	0/0	t0030	2935	1	0	0	0	0	1	copy fasta	NEUROD4	chr12	55014974	55035017
NEUROD6_chr7_31332465_31345726	1/1	t0001	946	308	73	56	130	14	33	copy fasta	NEUROD6	chr7	31332465	31345726
NEUROD6_chr7_31332465_31345726	0/0	t0002	946	100	18	23	43	4	12	copy fasta	NEUROD6	chr7	31332465	31345726
NEUROD6_chr7_31332465_31345726	0/0	t0003	946	1	0	0	1	0	0	copy fasta	NEUROD6	chr7	31332465	31345726
NEUROD6_chr7_31332465_31345726	0/0	t0004	946	1	0	1	0	0	0	copy fasta	NEUROD6	chr7	31332465	31345726
NEUROD6_chr7_31332465_31345726	0/0	t0005	946	1	0	0	1	0	0	copy fasta	NEUROD6	chr7	31332465	31345726
NEUROD6_chr7_31332465_31345726	0/0	t0006	946	1	0	0	0	0	1	copy fasta	NEUROD6	chr7	31332465	31345726
NEUROD6_chr7_31332465_31345726	0/0	t0007	946	1	1	0	0	0	0	copy fasta	NEUROD6	chr7	31332465	31345726
NEUROD6_chr7_31332465_31345726	0/0	t0008	946	1	0	0	1	0	0	copy fasta	NEUROD6	chr7	31332465	31345726
NEUROG1_chr5_135529282_135540964	1/0	t0001	970	289	58	59	126	13	32	copy fasta	NEUROG1	chr5	135529282	135540964
NEUROG1_chr5_135529282_135540964	0/0	t0002	970	87	15	19	39	2	12	copy fasta	NEUROG1	chr5	135529282	135540964
NEUROG1_chr5_135529282_135540964	0/0	t0003	970	23	17	1	3	0	2	copy fasta	NEUROG1	chr5	135529282	135540964
NEUROG1_chr5_135529282_135540964	0/0	t0004	970	3	2	1	0	0	0	copy fasta	NEUROG1	chr5	135529282	135540964
NEUROG1_chr5_135529282_135540964	0/1	t0005	970	2	0	0	0	1	0	copy fasta	NEUROG1	chr5	135529282	135540964
NEUROG1_chr5_135529282_135540964	0/0	t0006	970	2	0	0	2	0	0	copy fasta	NEUROG1	chr5	135529282	135540964
NEUROG1_chr5_135529282_135540964	0/0	t0007	970	1	1	0	0	0	0	copy fasta	NEUROG1	chr5	135529282	135540964