JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NEUROG1_chr5_135529282_135540964	0/0	t0008	970	1	1	0	0	0	0	copy fasta	NEUROG1	chr5	135529282	135540964
NEUROG2_chr4_112508516_112521180	1/1	t0001	1476	353	65	64	180	13	29	copy fasta	NEUROG2	chr4	112508516	112521180
NEUROG2_chr4_112508516_112521180	0/0	t0002	1476	49	11	8	23	1	6	copy fasta	NEUROG2	chr4	112508516	112521180
NEUROG2_chr4_112508516_112521180	0/0	t0003	1476	14	14	0	0	0	0	copy fasta	NEUROG2	chr4	112508516	112521180
NEUROG2_chr4_112508516_112521180	0/0	t0004	1476	4	0	0	4	0	0	copy fasta	NEUROG2	chr4	112508516	112521180
NEUROG2_chr4_112508516_112521180	0/0	t0005	1476	3	0	1	0	2	0	copy fasta	NEUROG2	chr4	112508516	112521180
NEUROG2_chr4_112508516_112521180	0/0	t0006	1476	2	2	0	0	0	0	copy fasta	NEUROG2	chr4	112508516	112521180
NEUROG2_chr4_112508516_112521180	0/0	t0007	1476	1	1	0	0	0	0	copy fasta	NEUROG2	chr4	112508516	112521180
NEUROG2_chr4_112508516_112521180	0/0	t0008	1476	1	0	0	0	0	1	copy fasta	NEUROG2	chr4	112508516	112521180
NEUROG2_chr4_112508516_112521180	0/0	t0009	1476	1	1	0	0	0	0	copy fasta	NEUROG2	chr4	112508516	112521180
NEUROG2_chr4_112508516_112521180	0/0	t0010	1476	1	0	1	0	0	0	copy fasta	NEUROG2	chr4	112508516	112521180
NEUROG2_chr4_112508516_112521180	0/0	t0011	1476	1	0	0	1	0	0	copy fasta	NEUROG2	chr4	112508516	112521180
NEUROG2_chr4_112508516_112521180	0/0	t0012	1476	1	1	0	0	0	0	copy fasta	NEUROG2	chr4	112508516	112521180
NEUROG2_chr4_112508516_112521180	0/0	t0013	1476	1	1	0	0	0	0	copy fasta	NEUROG2	chr4	112508516	112521180
NEUROG3_chr10_69566698_69578422	1/1	t0001	915	396	89	72	167	18	48	copy fasta	NEUROG3	chr10	69566698	69578422
NEUROG3_chr10_69566698_69578422	0/0	t0002	916	36	2	7	25	0	2	copy fasta	NEUROG3	chr10	69566698	69578422
NEUROG3_chr10_69566698_69578422	0/0	t0003	915	4	4	0	0	0	0	copy fasta	NEUROG3	chr10	69566698	69578422
NEUROG3_chr10_69566698_69578422	0/0	t0004	915	2	0	0	2	0	0	copy fasta	NEUROG3	chr10	69566698	69578422
NEUROG3_chr10_69566698_69578422	0/0	t0005	915	2	0	0	2	0	0	copy fasta	NEUROG3	chr10	69566698	69578422
NEUROG3_chr10_69566698_69578422	0/0	t0006	915	1	0	0	1	0	0	copy fasta	NEUROG3	chr10	69566698	69578422
NEUROG3_chr10_69566698_69578422	0/0	t0007	915	1	1	0	0	0	0	copy fasta	NEUROG3	chr10	69566698	69578422
NEUROG3_chr10_69566698_69578422	0/0	t0008	915	1	0	0	1	0	0	copy fasta	NEUROG3	chr10	69566698	69578422
NEUROG3_chr10_69566698_69578422	0/0	t0009	915	1	0	1	0	0	0	copy fasta	NEUROG3	chr10	69566698	69578422
NEXMIF_chrX_74727856_74930452	1/0	t0001	7167	119	33	15	55	2	13	copy fasta	NEXMIF	chrX	74727856	74930452
NEXMIF_chrX_74727856_74930452	0/1	t0002	7167	48	7	24	1	4	11	copy fasta	NEXMIF	chrX	74727856	74930452
NEXMIF_chrX_74727856_74930452	0/0	t0003	7167	11	0	0	11	0	0	copy fasta	NEXMIF	chrX	74727856	74930452
NEXMIF_chrX_74727856_74930452	0/0	t0004	7165	6	3	1	0	0	2	copy fasta	NEXMIF	chrX	74727856	74930452
NEXMIF_chrX_74727856_74930452	0/0	t0005	7167	5	5	0	0	0	0	copy fasta	NEXMIF	chrX	74727856	74930452
NEXMIF_chrX_74727856_74930452	0/0	t0006	7167	3	3	0	0	0	0	copy fasta	NEXMIF	chrX	74727856	74930452
NEXMIF_chrX_74727856_74930452	0/0	t0007	7166	2	2	0	0	0	0	copy fasta	NEXMIF	chrX	74727856	74930452
NEXMIF_chrX_74727856_74930452	0/0	t0008	7167	2	2	0	0	0	0	copy fasta	NEXMIF	chrX	74727856	74930452
NEXMIF_chrX_74727856_74930452	0/0	t0009	7164	2	0	0	0	0	2	copy fasta	NEXMIF	chrX	74727856	74930452
NEXMIF_chrX_74727856_74930452	0/0	t0010	7169	2	1	0	1	0	0	copy fasta	NEXMIF	chrX	74727856	74930452
NEXMIF_chrX_74727856_74930452	0/0	t0011	7167	1	1	0	0	0	0	copy fasta	NEXMIF	chrX	74727856	74930452
NEXMIF_chrX_74727856_74930452	0/0	t0012	7167	1	0	1	0	0	0	copy fasta	NEXMIF	chrX	74727856	74930452
NEXMIF_chrX_74727856_74930452	0/0	t0013	7167	1	1	0	0	0	0	copy fasta	NEXMIF	chrX	74727856	74930452
NEXMIF_chrX_74727856_74930452	0/0	t0014	7167	1	0	1	0	0	0	copy fasta	NEXMIF	chrX	74727856	74930452
NEXMIF_chrX_74727856_74930452	0/0	t0015	7169	1	0	1	0	0	0	copy fasta	NEXMIF	chrX	74727856	74930452
NEXMIF_chrX_74727856_74930452	0/0	t0016	7167	1	1	0	0	0	0	copy fasta	NEXMIF	chrX	74727856	74930452
NEXMIF_chrX_74727856_74930452	0/0	t0017	7167	1	1	0	0	0	0	copy fasta	NEXMIF	chrX	74727856	74930452
NEXMIF_chrX_74727856_74930452	0/0	t0018	7167	1	0	0	1	0	0	copy fasta	NEXMIF	chrX	74727856	74930452
NEXMIF_chrX_74727856_74930452	0/0	t0019	7173	1	0	0	1	0	0	copy fasta	NEXMIF	chrX	74727856	74930452
NEXMIF_chrX_74727856_74930452	0/0	t0020	7167	1	1	0	0	0	0	copy fasta	NEXMIF	chrX	74727856	74930452
NEXMIF_chrX_74727856_74930452	0/0	t0021	7167	1	0	0	1	0	0	copy fasta	NEXMIF	chrX	74727856	74930452
NEXMIF_chrX_74727856_74930452	0/0	t0022	7167	1	0	0	1	0	0	copy fasta	NEXMIF	chrX	74727856	74930452
NEXMIF_chrX_74727856_74930452	0/0	t0023	7167	1	0	0	1	0	0	copy fasta	NEXMIF	chrX	74727856	74930452
NEXMIF_chrX_74727856_74930452	0/0	t0024	7168	1	0	0	1	0	0	copy fasta	NEXMIF	chrX	74727856	74930452
NEXMIF_chrX_74727856_74930452	0/0	t0025	7167	1	1	0	0	0	0	copy fasta	NEXMIF	chrX	74727856	74930452
NEXMIF_chrX_74727856_74930452	0/0	t0026	7167	1	0	0	1	0	0	copy fasta	NEXMIF	chrX	74727856	74930452
NEXMIF_chrX_74727856_74930452	0/0	t0027	7168	1	0	0	1	0	0	copy fasta	NEXMIF	chrX	74727856	74930452