JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NEXMIF_chrX_74727856_74930452	0/0	t0028	7166	1	0	0	1	0	0	copy fasta	NEXMIF	chrX	74727856	74930452
NEXMIF_chrX_74727856_74930452	0/0	t0029	7167	1	0	0	0	0	1	copy fasta	NEXMIF	chrX	74727856	74930452
NEXMIF_chrX_74727856_74930452	0/0	t0030	7167	1	0	1	0	0	0	copy fasta	NEXMIF	chrX	74727856	74930452
NEXMIF_chrX_74727856_74930452	0/0	t0031	7167	1	0	0	0	0	1	copy fasta	NEXMIF	chrX	74727856	74930452
NEXMIF_chrX_74727856_74930452	0/0	t0032	7166	1	1	0	0	0	0	copy fasta	NEXMIF	chrX	74727856	74930452
NEXMIF_chrX_74727856_74930452	0/0	t0033	7167	1	0	0	0	1	0	copy fasta	NEXMIF	chrX	74727856	74930452
NEXMIF_chrX_74727856_74930452	0/0	t0034	7173	1	1	0	0	0	0	copy fasta	NEXMIF	chrX	74727856	74930452
NEXN_chr1_77883624_77948895	1/1	t0001	1255	160	42	46	38	10	22	copy fasta	NEXN	chr1	77883624	77948895
NEXN_chr1_77883624_77948895	0/0	t0002	1255	38	2	9	21	2	4	copy fasta	NEXN	chr1	77883624	77948895
NEXN_chr1_77883624_77948895	0/0	t0003	1248	28	8	0	19	0	1	copy fasta	NEXN	chr1	77883624	77948895
NEXN_chr1_77883624_77948895	0/0	t0004	1256	16	4	2	3	0	7	copy fasta	NEXN	chr1	77883624	77948895
NEXN_chr1_77883624_77948895	0/0	t0005	1256	5	5	0	0	0	0	copy fasta	NEXN	chr1	77883624	77948895
NEXN_chr1_77883624_77948895	0/0	t0006	1255	4	3	1	0	0	0	copy fasta	NEXN	chr1	77883624	77948895
NEXN_chr1_77883624_77948895	0/0	t0007	1256	4	4	0	0	0	0	copy fasta	NEXN	chr1	77883624	77948895
NEXN_chr1_77883624_77948895	0/0	t0008	1248	3	0	0	3	0	0	copy fasta	NEXN	chr1	77883624	77948895
NEXN_chr1_77883624_77948895	0/0	t0009	1256	2	2	0	0	0	0	copy fasta	NEXN	chr1	77883624	77948895
NEXN_chr1_77883624_77948895	0/0	t0010	1256	1	1	0	0	0	0	copy fasta	NEXN	chr1	77883624	77948895
NEXN_chr1_77883624_77948895	0/0	t0011	1249	1	0	0	1	0	0	copy fasta	NEXN	chr1	77883624	77948895
NEXN_chr1_77883624_77948895	0/0	t0012	1255	1	1	0	0	0	0	copy fasta	NEXN	chr1	77883624	77948895
NEXN_chr1_77883624_77948895	0/0	t0013	1255	1	0	0	1	0	0	copy fasta	NEXN	chr1	77883624	77948895
NEXN_chr1_77883624_77948895	0/0	t0014	1255	1	1	0	0	0	0	copy fasta	NEXN	chr1	77883624	77948895
NEXN_chr1_77883624_77948895	0/0	t0015	1255	1	0	1	0	0	0	copy fasta	NEXN	chr1	77883624	77948895
NEXN_chr1_77883624_77948895	0/0	t0016	1255	1	0	1	0	0	0	copy fasta	NEXN	chr1	77883624	77948895
NEXN_chr1_77883624_77948895	0/0	t0017	1256	1	1	0	0	0	0	copy fasta	NEXN	chr1	77883624	77948895
NF1_chr17_31089977_31382675	0/0	t0001	3852	84	13	13	47	4	7	copy fasta	NF1	chr17	31089977	31382675
NF1_chr17_31089977_31382675	0/1	t0002	3854	66	4	13	38	4	6	copy fasta	NF1	chr17	31089977	31382675
NF1_chr17_31089977_31382675	0/0	t0003	3852	49	34	10	5	0	0	copy fasta	NF1	chr17	31089977	31382675
NF1_chr17_31089977_31382675	1/0	t0004	3854	13	1	5	6	0	0	copy fasta	NF1	chr17	31089977	31382675
NF1_chr17_31089977_31382675	0/0	t0005	3852	5	5	0	0	0	0	copy fasta	NF1	chr17	31089977	31382675
NF1_chr17_31089977_31382675	0/0	t0006	3853	4	4	0	0	0	0	copy fasta	NF1	chr17	31089977	31382675
NF1_chr17_31089977_31382675	0/0	t0007	3852	3	0	0	0	0	3	copy fasta	NF1	chr17	31089977	31382675
NF1_chr17_31089977_31382675	0/0	t0008	3852	2	2	0	0	0	0	copy fasta	NF1	chr17	31089977	31382675
NF1_chr17_31089977_31382675	0/0	t0009	3855	2	2	0	0	0	0	copy fasta	NF1	chr17	31089977	31382675
NF1_chr17_31089977_31382675	0/0	t0010	3852	2	0	0	2	0	0	copy fasta	NF1	chr17	31089977	31382675
NF1_chr17_31089977_31382675	0/0	t0011	3851	2	0	0	2	0	0	copy fasta	NF1	chr17	31089977	31382675
NF1_chr17_31089977_31382675	0/0	t0012	3852	1	1	0	0	0	0	copy fasta	NF1	chr17	31089977	31382675
NF1_chr17_31089977_31382675	0/0	t0013	3854	1	0	1	0	0	0	copy fasta	NF1	chr17	31089977	31382675
NF1_chr17_31089977_31382675	0/0	t0014	3854	1	0	0	0	0	1	copy fasta	NF1	chr17	31089977	31382675
NF1_chr17_31089977_31382675	0/0	t0015	3852	1	0	0	1	0	0	copy fasta	NF1	chr17	31089977	31382675
NF1_chr17_31089977_31382675	0/0	t0016	3852	1	1	0	0	0	0	copy fasta	NF1	chr17	31089977	31382675
NF1_chr17_31089977_31382675	0/0	t0017	3852	1	1	0	0	0	0	copy fasta	NF1	chr17	31089977	31382675
NF1_chr17_31089977_31382675	0/0	t0018	3852	1	0	0	1	0	0	copy fasta	NF1	chr17	31089977	31382675
NF1_chr17_31089977_31382675	0/0	t0019	3852	1	1	0	0	0	0	copy fasta	NF1	chr17	31089977	31382675
NF1_chr17_31089977_31382675	0/0	t0020	3853	1	1	0	0	0	0	copy fasta	NF1	chr17	31089977	31382675
NF1_chr17_31089977_31382675	0/0	t0021	3855	1	1	0	0	0	0	copy fasta	NF1	chr17	31089977	31382675
NF1_chr17_31089977_31382675	0/0	t0022	3852	1	0	0	1	0	0	copy fasta	NF1	chr17	31089977	31382675
NF1_chr17_31089977_31382675	0/0	t0023	3852	1	1	0	0	0	0	copy fasta	NF1	chr17	31089977	31382675
NF1_chr17_31089977_31382675	0/0	t0024	3854	1	0	0	0	0	1	copy fasta	NF1	chr17	31089977	31382675
NF1_chr17_31089977_31382675	0/0	t0025	3852	1	1	0	0	0	0	copy fasta	NF1	chr17	31089977	31382675
NF1_chr17_31089977_31382675	0/0	t0026	3851	1	0	0	1	0	0	copy fasta	NF1	chr17	31089977	31382675