Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARL4A_chr7_12682633_12695958	0/0	t0045	2287	1	0	0	0	0	1	copy fasta	ARL4A	chr7	12682633	12695958
ARL4C_chr2_234488041_234502081	0/0	t0001	3261	115	15	17	65	4	14	copy fasta	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	1/1	t0002	3261	111	16	26	42	7	18	copy fasta	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	t0003	3253	77	2	6	66	2	1	copy fasta	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	t0004	3260	46	2	15	26	1	2	copy fasta	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	t0005	3259	18	18	0	0	0	0	copy fasta	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	t0006	3259	13	12	1	0	0	0	copy fasta	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	t0007	3264	9	1	7	0	0	1	copy fasta	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	t0008	3256	8	7	0	0	0	1	copy fasta	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	t0009	3253	8	6	1	0	1	0	copy fasta	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	t0010	3257	5	0	3	0	2	0	copy fasta	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	t0011	3261	4	0	0	4	0	0	copy fasta	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	t0012	3257	4	4	0	0	0	0	copy fasta	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	t0013	3264	4	1	1	0	0	2	copy fasta	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	t0014	3261	4	0	1	3	0	0	copy fasta	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	t0015	3256	3	2	1	0	0	0	copy fasta	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	t0016	3253	3	3	0	0	0	0	copy fasta	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	t0017	3261	3	3	0	0	0	0	copy fasta	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	t0018	3261	3	2	1	0	0	0	copy fasta	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	t0019	3257	2	2	0	0	0	0	copy fasta	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	t0020	3253	2	0	0	2	0	0	copy fasta	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	t0021	3261	1	0	1	0	0	0	copy fasta	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	t0022	3261	1	0	0	1	0	0	copy fasta	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	t0023	3262	1	0	0	1	0	0	copy fasta	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	t0024	3261	1	0	0	1	0	0	copy fasta	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	t0025	3261	1	0	1	0	0	0	copy fasta	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	t0026	3261	1	0	0	1	0	0	copy fasta	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	t0027	3261	1	0	0	1	0	0	copy fasta	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	t0028	3261	1	1	0	0	0	0	copy fasta	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	t0029	3260	1	1	0	0	0	0	copy fasta	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	t0030	3263	1	0	0	1	0	0	copy fasta	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	t0031	3261	1	0	0	0	0	1	copy fasta	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	t0032	3264	1	1	0	0	0	0	copy fasta	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	t0033	3252	1	1	0	0	0	0	copy fasta	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	t0034	3253	1	0	0	0	0	1	copy fasta	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	t0035	3254	1	0	0	0	0	1	copy fasta	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	t0036	3258	1	0	0	1	0	0	copy fasta	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	t0037	3261	1	0	0	0	1	0	copy fasta	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	t0038	3261	1	0	0	0	0	1	copy fasta	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	t0039	3261	1	0	1	0	0	0	copy fasta	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	t0040	3261	1	0	0	1	0	0	copy fasta	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	t0041	3261	1	0	0	0	0	1	copy fasta	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	t0042	3253	1	0	0	1	0	0	copy fasta	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	t0043	3253	1	0	0	1	0	0	copy fasta	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	t0044	3252	1	0	1	0	0	0	copy fasta	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	t0045	3261	1	0	0	1	0	0	copy fasta	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	t0046	3260	1	0	0	1	0	0	copy fasta	ARL4C	chr2	234488041	234502081
ARL4D_chr17_43393993_43406137	1/1	t0001	973	273	60	54	113	10	34	copy fasta	ARL4D	chr17	43393993	43406137
ARL4D_chr17_43393993_43406137	0/0	t0002	973	87	0	13	58	3	13	copy fasta	ARL4D	chr17	43393993	43406137
ARL4D_chr17_43393993_43406137	0/0	t0003	973	22	20	2	0	0	0	copy fasta	ARL4D	chr17	43393993	43406137