JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NF1_chr17_31089977_31382675	0/0	t0027	3852	1	1	0	0	0	0	copy fasta	NF1	chr17	31089977	31382675
NF1_chr17_31089977_31382675	0/0	t0028	3854	1	0	0	0	0	1	copy fasta	NF1	chr17	31089977	31382675
NF1_chr17_31089977_31382675	0/0	t0029	3852	1	0	0	1	0	0	copy fasta	NF1	chr17	31089977	31382675
NF1_chr17_31089977_31382675	0/0	t0030	3854	1	0	0	0	0	1	copy fasta	NF1	chr17	31089977	31382675
NF1_chr17_31089977_31382675	0/0	t0031	3854	1	0	0	1	0	0	copy fasta	NF1	chr17	31089977	31382675
NF2_chr22_29598633_29703598	0/0	t0001	4164	54	9	5	32	3	5	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/1	t0002	4163	45	2	14	17	3	8	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	t0003	4164	39	13	1	20	0	5	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	t0004	4164	27	0	1	23	0	3	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	t0005	4165	23	1	8	5	4	5	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	t0006	4164	17	16	1	0	0	0	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	t0007	4164	11	2	5	3	0	1	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	t0008	4165	11	10	1	0	0	0	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	t0009	4164	11	0	3	7	0	1	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	t0010	4164	10	0	8	0	2	0	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	t0011	4164	7	3	2	1	0	1	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	t0012	4165	5	0	0	4	0	1	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	t0013	4164	5	5	0	0	0	0	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	t0014	4165	5	2	1	2	0	0	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	t0015	4164	4	4	0	0	0	0	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	t0016	4158	4	0	0	2	0	2	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	t0017	4164	4	0	1	2	1	0	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	t0018	4165	3	0	0	2	0	1	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	t0019	4162	3	1	0	2	0	0	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	t0020	4165	3	0	0	3	0	0	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	t0021	4165	3	1	0	2	0	0	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	t0022	4165	2	0	0	2	0	0	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	t0023	4154	2	2	0	0	0	0	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	t0024	4163	2	1	1	0	0	0	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	t0025	4164	2	2	0	0	0	0	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	t0026	4164	2	0	2	0	0	0	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	t0027	4165	2	0	0	2	0	0	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	t0028	4164	1	0	0	0	1	0	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	t0029	4164	1	0	1	0	0	0	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	t0030	4163	1	1	0	0	0	0	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	t0031	4163	1	0	0	0	1	0	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	t0032	4164	1	0	0	0	0	1	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	t0033	4164	1	1	0	0	0	0	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	t0034	4165	1	0	0	1	0	0	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	t0035	4164	1	0	0	0	0	1	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	t0036	4163	1	1	0	0	0	0	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	t0037	4164	1	0	0	0	0	1	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	t0038	4164	1	0	1	0	0	0	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	t0039	4163	1	0	0	1	0	0	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	t0040	4163	1	0	1	0	0	0	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	t0041	4165	1	0	0	1	0	0	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	t0042	4165	1	1	0	0	0	0	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	t0043	4164	1	1	0	0	0	0	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	t0044	4163	1	1	0	0	0	0	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	t0045	4164	1	1	0	0	0	0	copy fasta	NF2	chr22	29598633	29703598