JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NF2_chr22_29598633_29703598	0/0	t0046	4153	1	1	0	0	0	0	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	t0047	4163	1	0	0	0	1	0	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	t0048	4164	1	1	0	0	0	0	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	t0049	4164	1	0	1	0	0	0	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	t0050	4164	1	0	0	1	0	0	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	t0051	4164	1	1	0	0	0	0	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	t0052	4164	1	1	0	0	0	0	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	t0053	4165	1	0	1	0	0	0	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	t0054	4165	1	1	0	0	0	0	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	t0055	4164	1	1	0	0	0	0	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	t0056	4165	1	0	1	0	0	0	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	t0057	4164	1	0	1	0	0	0	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	t0058	4164	1	1	0	0	0	0	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	t0059	4163	1	1	0	0	0	0	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	t0060	4164	1	1	0	0	0	0	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	1/0	t0061	4163	1	0	0	0	0	0	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	t0062	4163	1	0	0	1	0	0	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	t0063	4164	1	0	0	1	0	0	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	t0064	4165	1	0	0	1	0	0	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	t0065	4165	1	0	1	0	0	0	copy fasta	NF2	chr22	29598633	29703598
NFAM1_chr22_42375407_42437403	0/1	t0001	4801	73	3	13	34	8	14	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	t0002	4801	62	3	16	32	2	9	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	t0003	4801	44	2	4	31	0	7	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	t0004	4801	26	24	2	0	0	0	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	t0005	4801	16	11	2	0	0	3	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	t0006	4797	16	0	0	15	0	1	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	t0007	4801	12	5	5	0	1	1	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	t0008	4801	12	2	7	0	1	2	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	t0009	4801	10	0	0	10	0	0	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	t0010	4801	10	0	10	0	0	0	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	1/0	t0011	4801	7	1	2	0	2	1	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	t0012	4801	7	1	2	1	0	3	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	t0013	4801	6	5	1	0	0	0	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	t0014	4802	5	1	2	0	2	0	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	t0015	4801	5	0	0	5	0	0	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	t0016	4803	5	5	0	0	0	0	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	t0017	4801	4	4	0	0	0	0	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	t0018	4801	3	2	1	0	0	0	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	t0019	4801	3	0	0	3	0	0	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	t0020	4801	2	2	0	0	0	0	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	t0021	4801	2	0	1	1	0	0	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	t0022	4801	2	2	0	0	0	0	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	t0023	4801	2	2	0	0	0	0	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	t0024	4801	2	0	0	2	0	0	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	t0025	4801	2	1	1	0	0	0	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	t0026	4801	2	2	0	0	0	0	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	t0027	4801	2	0	0	2	0	0	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	t0028	4801	2	2	0	0	0	0	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	t0029	4801	2	1	1	0	0	0	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	t0030	4801	2	0	1	0	0	1	copy fasta	NFAM1	chr22	42375407	42437403