JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NFAM1_chr22_42375407_42437403	0/0	t0031	4801	1	0	0	1	0	0	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	t0032	4801	1	0	0	0	0	1	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	t0033	4801	1	0	0	1	0	0	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	t0034	4801	1	0	0	0	0	1	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	t0035	4801	1	0	1	0	0	0	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	t0036	4801	1	0	0	1	0	0	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	t0037	4801	1	0	0	1	0	0	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	t0038	4801	1	0	0	1	0	0	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	t0039	4801	1	1	0	0	0	0	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	t0040	4801	1	0	0	1	0	0	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	t0041	4801	1	1	0	0	0	0	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	t0042	4801	1	0	1	0	0	0	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	t0043	4801	1	0	0	0	0	1	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	t0044	4801	1	1	0	0	0	0	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	t0045	4802	1	0	0	1	0	0	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	t0046	4801	1	0	1	0	0	0	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	t0047	4801	1	1	0	0	0	0	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	t0048	4801	1	0	1	0	0	0	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	t0049	4801	1	1	0	0	0	0	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	t0050	4801	1	1	0	0	0	0	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	t0051	4801	1	1	0	0	0	0	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	t0052	4801	1	1	0	0	0	0	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	t0053	4802	1	1	0	0	0	0	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	t0054	4801	1	1	0	0	0	0	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	t0055	4801	1	1	0	0	0	0	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	t0056	4801	1	1	0	0	0	0	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	t0057	4802	1	0	0	0	0	1	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	t0058	4802	1	0	0	0	0	1	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	t0059	4801	1	1	0	0	0	0	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	t0060	4801	1	0	0	1	0	0	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	t0061	4801	1	1	0	0	0	0	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	t0062	4803	1	1	0	0	0	0	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	t0063	4801	1	1	0	0	0	0	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	t0064	4801	1	0	1	0	0	0	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	t0065	4801	1	1	0	0	0	0	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	t0066	4801	1	0	0	0	0	1	copy fasta	NFAM1	chr22	42375407	42437403
NFASC_chr1_204823652_205027822	0/1	t0001	6622	85	3	36	33	3	9	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	t0002	6626	24	6	3	11	0	4	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	t0003	6622	10	10	0	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	t0004	6619	9	9	0	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	t0005	6622	8	7	1	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	t0006	6630	7	0	1	5	1	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	t0007	6626	6	5	1	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	1/0	t0008	6614	6	3	2	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	t0009	6626	4	0	4	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	t0010	6623	4	2	1	0	0	1	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	t0011	6630	3	3	0	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	t0012	6626	3	0	0	3	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	t0013	6622	3	0	0	3	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	t0014	6614	3	1	1	0	0	1	copy fasta	NFASC	chr1	204823652	205027822