JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NFASC_chr1_204823652_205027822	0/0	t0015	6622	3	0	3	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	t0016	6618	2	0	0	2	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	t0017	6626	2	2	0	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	t0018	6618	2	2	0	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	t0019	6630	2	2	0	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	t0020	6618	2	1	0	0	0	1	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	t0021	6626	2	0	2	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	t0022	6622	2	2	0	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	t0023	6622	2	2	0	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	t0024	6634	2	1	1	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	t0025	6622	2	2	0	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	t0026	6622	1	1	0	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	t0027	6619	1	1	0	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	t0028	6615	1	1	0	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	t0029	6622	1	1	0	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	t0030	6626	1	1	0	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	t0031	6626	1	1	0	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	t0032	6634	1	1	0	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	t0033	6622	1	0	0	1	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	t0034	6626	1	1	0	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	t0035	6626	1	0	0	1	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	t0036	6622	1	0	1	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	t0037	6622	1	0	0	1	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	t0038	6622	1	0	0	1	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	t0039	6622	1	0	0	0	0	1	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	t0040	6622	1	0	0	1	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	t0041	6622	1	1	0	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	t0042	6622	1	0	0	0	0	1	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	t0043	6626	1	0	1	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	t0044	6627	1	1	0	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	t0045	6615	1	0	1	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	t0046	6622	1	0	0	1	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	t0047	6622	1	0	0	1	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	t0048	6614	1	0	1	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	t0049	6634	1	1	0	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	t0050	6622	1	1	0	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	t0051	6622	1	0	0	1	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	t0052	6626	1	0	0	1	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	t0053	6622	1	1	0	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204865862_205027822	0/1	t0001	6591	100	4	39	38	7	11	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	t0002	6595	31	7	2	10	2	10	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	t0003	6591	12	11	1	0	0	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	t0004	6591	11	11	0	0	0	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	t0005	6588	8	8	0	0	0	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	t0006	6599	7	0	1	5	1	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	t0007	6595	7	6	1	0	0	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	1/0	t0008	6583	7	4	2	0	0	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	t0009	6599	5	5	0	0	0	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	t0010	6592	5	3	1	0	0	1	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	t0011	6591	4	0	0	4	0	0	copy fasta	NFASC	chr1	204865862	205027822