JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NFASC_chr1_204865862_205027822	0/0	t0012	6595	4	0	3	0	0	1	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	t0013	6587	3	2	0	0	1	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	t0014	6595	3	0	0	3	0	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	t0015	6591	3	3	0	0	0	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	t0016	6583	3	1	0	0	0	2	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	t0017	6603	3	2	1	0	0	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	t0018	6587	2	0	0	2	0	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	t0019	6595	2	2	0	0	0	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	t0020	6595	2	0	0	2	0	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	t0021	6599	2	2	0	0	0	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	t0022	6587	2	1	0	0	0	1	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	t0023	6595	2	0	2	0	0	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	t0024	6591	2	2	0	0	0	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	t0025	6582	2	0	1	0	1	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	t0026	6582	2	0	1	0	0	1	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	t0027	6591	2	0	2	0	0	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	t0028	6595	1	1	0	0	0	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	t0029	6595	1	0	0	0	0	1	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	t0030	6591	1	1	0	0	0	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	t0031	6588	1	1	0	0	0	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	t0032	6584	1	1	0	0	0	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	t0033	6591	1	1	0	0	0	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	t0034	6595	1	1	0	0	0	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	t0035	6603	1	1	0	0	0	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	t0036	6591	1	0	0	1	0	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	t0037	6595	1	1	0	0	0	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	t0038	6591	1	0	1	0	0	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	t0039	6591	1	0	0	1	0	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	t0040	6591	1	0	0	0	0	1	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	t0041	6591	1	0	0	1	0	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	t0042	6591	1	0	0	0	0	1	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	t0043	6591	1	1	0	0	0	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	t0044	6591	1	0	0	1	0	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	t0045	6591	1	0	0	0	0	1	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	t0046	6595	1	0	1	0	0	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	t0047	6596	1	1	0	0	0	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	t0048	6584	1	0	1	0	0	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	t0049	6591	1	0	0	1	0	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	t0050	6591	1	0	0	1	0	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	t0051	6592	1	0	0	0	0	1	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	t0052	6603	1	1	0	0	0	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	t0053	6591	1	1	0	0	0	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	t0054	6591	1	0	0	1	0	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	t0055	6595	1	0	0	1	0	0	copy fasta	NFASC	chr1	204865862	205027822
NFAT5_chr16_69560966_69709654	0/0	t0001	8640	79	13	8	45	4	9	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	1/1	t0002	8640	65	5	21	20	7	10	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	t0003	8641	25	0	1	22	0	2	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	t0004	8641	23	0	0	22	0	1	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	t0005	8641	21	4	4	6	2	5	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	t0006	8639	18	0	3	11	3	1	copy fasta	NFAT5	chr16	69560966	69709654