JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NFAT5_chr16_69560966_69709654	0/0	t0007	8638	17	1	5	11	0	0	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	t0008	8639	16	16	0	0	0	0	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	t0009	8640	11	10	1	0	0	0	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	t0010	8643	9	1	1	5	0	2	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	t0011	8639	8	8	0	0	0	0	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	t0012	8640	6	0	6	0	0	0	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	t0013	8639	5	0	5	0	0	0	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	t0014	8643	5	0	0	5	0	0	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	t0015	8640	3	3	0	0	0	0	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	t0016	8643	3	3	0	0	0	0	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	t0017	8638	3	0	0	3	0	0	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	t0018	8641	3	0	1	0	1	1	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	t0019	8641	3	3	0	0	0	0	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	t0020	8637	3	3	0	0	0	0	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	t0021	8638	2	2	0	0	0	0	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	t0022	8640	2	0	0	2	0	0	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	t0023	8640	2	0	0	2	0	0	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	t0024	8640	2	0	2	0	0	0	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	t0025	8641	2	0	0	2	0	0	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	t0026	8638	2	2	0	0	0	0	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	t0027	8639	2	2	0	0	0	0	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	t0028	8640	2	0	1	0	0	1	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	t0029	8637	2	2	0	0	0	0	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	t0030	8641	2	0	0	0	0	2	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	t0031	8639	1	0	0	1	0	0	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	t0032	8642	1	0	0	1	0	0	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	t0033	8642	1	0	0	1	0	0	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	t0034	8640	1	0	0	0	0	1	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	t0035	8640	1	0	0	0	1	0	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	t0036	8640	1	0	1	0	0	0	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	t0037	8640	1	0	0	1	0	0	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	t0038	8638	1	1	0	0	0	0	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	t0039	8639	1	1	0	0	0	0	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	t0040	8640	1	1	0	0	0	0	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	t0041	8640	1	0	0	1	0	0	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	t0042	8639	1	0	0	1	0	0	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	t0043	8640	1	0	1	0	0	0	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	t0044	8640	1	0	0	1	0	0	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	t0045	8641	1	0	0	1	0	0	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	t0046	8637	1	1	0	0	0	0	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	t0047	8641	1	0	0	1	0	0	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	t0048	8638	1	1	0	0	0	0	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	t0049	8639	1	0	0	1	0	0	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	t0050	8641	1	1	0	0	0	0	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	t0051	8639	1	1	0	0	0	0	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	t0052	8639	1	1	0	0	0	0	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	t0053	8640	1	1	0	0	0	0	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	t0054	8641	1	0	0	0	0	1	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	t0055	8639	1	1	0	0	0	0	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	t0056	8642	1	1	0	0	0	0	copy fasta	NFAT5	chr16	69560966	69709654