JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NFAT5_chr16_69560966_69709654	0/0	t0057	8641	1	1	0	0	0	0	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	t0058	8641	1	0	0	1	0	0	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	t0059	8641	1	1	0	0	0	0	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	t0060	8627	1	0	0	1	0	0	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	t0061	8643	1	1	0	0	0	0	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	t0062	8641	1	0	1	0	0	0	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	t0063	8641	1	0	0	1	0	0	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	t0064	8639	1	0	0	1	0	0	copy fasta	NFAT5	chr16	69560966	69709654
NFATC1_chr18_79390930_79534323	0/1	t0001	2042	65	0	25	29	2	8	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	t0002	2042	53	8	16	11	5	13	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	t0003	2042	33	1	2	23	1	6	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	t0004	2042	19	11	2	2	1	3	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	t0005	2042	15	13	2	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	t0006	2042	13	0	2	5	0	6	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	t0007	2042	13	7	4	1	0	1	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	t0008	2040	8	2	4	0	2	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	t0009	2042	7	4	1	2	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	t0010	2042	6	0	1	3	2	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	t0011	2042	6	6	0	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	t0012	2042	6	3	0	3	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	t0013	2042	4	0	1	3	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	t0014	2042	4	4	0	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	t0015	2042	4	0	2	2	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	t0016	2042	4	1	0	2	0	1	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	t0017	2042	3	0	0	3	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	t0018	2042	3	3	0	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	t0019	2042	3	3	0	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	t0020	2042	2	0	0	2	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	t0021	2040	2	0	1	0	0	1	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	t0022	2040	2	0	1	0	0	1	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	t0023	2042	2	0	2	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	t0024	2040	2	0	2	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	t0025	2042	2	2	0	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	t0026	2042	2	2	0	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	t0027	2042	2	0	2	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	t0028	2042	2	1	1	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	t0029	2042	2	2	0	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	t0030	2042	2	0	2	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	t0031	2042	2	2	0	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	t0032	2042	1	1	0	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	t0033	2042	1	0	0	1	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	t0034	2042	1	0	0	1	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	t0035	2042	1	1	0	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	t0036	2042	1	1	0	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	t0037	2042	1	0	1	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	t0038	2042	1	1	0	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	t0039	2042	1	1	0	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	t0040	2042	1	0	0	0	0	1	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	t0041	2042	1	1	0	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	t0042	2042	1	0	0	1	0	0	copy fasta	NFATC1	chr18	79390930	79534323