JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NFATC1_chr18_79390930_79534323	0/0	t0043	2042	1	0	0	1	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	t0044	2042	1	0	0	1	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	t0045	2042	1	0	1	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	t0046	2042	1	1	0	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	t0047	2042	1	1	0	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	t0048	2042	1	1	0	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	1/0	t0049	2042	1	0	0	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	t0050	2042	1	0	1	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	t0051	2042	1	0	0	1	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	t0052	2042	1	0	0	1	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	t0053	2042	1	1	0	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	t0054	2042	1	1	0	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	t0055	2042	1	1	0	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	t0056	2042	1	1	0	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	t0057	2042	1	0	0	0	0	1	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	t0058	2042	1	0	0	0	1	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	t0059	2042	1	0	0	1	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	t0060	2028	1	0	0	1	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC2IP_chr16_28945937_28972092	0/0	t0001	3307	61	5	6	41	3	6	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	t0002	3307	51	5	9	32	1	4	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	t0003	3306	51	15	9	13	2	12	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	1/1	t0004	3305	35	3	17	2	6	5	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	t0005	3305	31	1	0	29	0	1	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	t0006	3305	29	2	1	22	0	4	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	t0007	3306	13	0	6	6	0	1	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	t0008	3308	10	0	3	5	2	0	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	t0009	3305	8	8	0	0	0	0	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	t0010	3306	6	0	2	2	2	0	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	t0011	3306	5	5	0	0	0	0	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	t0012	3304	5	5	0	0	0	0	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	t0013	3308	5	2	0	3	0	0	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	t0014	3306	5	2	1	2	0	0	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	t0015	3306	4	4	0	0	0	0	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	t0016	3306	4	1	1	2	0	0	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	t0017	3306	4	2	0	2	0	0	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	t0018	3305	3	0	0	3	0	0	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	t0019	3307	3	3	0	0	0	0	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	t0020	3306	3	0	1	0	0	2	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	t0021	3304	3	0	2	1	0	0	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	t0022	3305	2	2	0	0	0	0	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	t0023	3324	2	1	1	0	0	0	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	t0024	3323	2	2	0	0	0	0	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	t0025	3323	2	2	0	0	0	0	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	t0026	3307	2	0	2	0	0	0	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	t0027	3308	2	0	0	2	0	0	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	t0028	3308	2	0	1	1	0	0	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	t0029	3304	2	1	0	1	0	0	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	t0030	3306	2	2	0	0	0	0	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	t0031	3305	2	0	0	2	0	0	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	t0032	3305	2	2	0	0	0	0	copy fasta	NFATC2IP	chr16	28945937	28972092