JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NFATC2IP_chr16_28945937_28972092	0/0	t0033	3324	1	1	0	0	0	0	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	t0034	3325	1	1	0	0	0	0	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	t0035	3322	1	1	0	0	0	0	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	t0036	3322	1	1	0	0	0	0	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	t0037	3307	1	1	0	0	0	0	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	t0038	3143	1	0	1	0	0	0	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	t0039	3306	1	0	0	1	0	0	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	t0040	3305	1	0	0	1	0	0	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	t0041	3304	1	0	0	1	0	0	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	t0042	3307	1	0	0	0	0	1	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	t0043	3307	1	1	0	0	0	0	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	t0044	3305	1	0	0	1	0	0	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	t0045	3307	1	0	0	1	0	0	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	t0046	3305	1	0	0	1	0	0	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	t0047	3310	1	0	0	1	0	0	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	t0048	3306	1	0	0	1	0	0	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	t0049	3306	1	0	0	1	0	0	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	t0050	3309	1	1	0	0	0	0	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	t0051	3306	1	0	0	1	0	0	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	t0052	3304	1	0	0	1	0	0	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	t0053	3305	1	1	0	0	0	0	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	t0054	3307	1	1	0	0	0	0	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	t0055	3306	1	1	0	0	0	0	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	t0056	3304	1	0	0	1	0	0	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	t0057	3306	1	0	0	0	0	1	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	t0058	3305	1	0	0	0	0	1	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	t0059	3305	1	0	0	0	0	1	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	t0060	3305	1	0	0	1	0	0	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	t0061	3305	1	1	0	0	0	0	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	t0062	3305	1	0	0	1	0	0	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	t0063	3305	1	0	0	1	0	0	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	t0064	3304	1	0	1	0	0	0	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	t0065	3308	1	0	0	0	0	1	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	t0066	3305	1	0	0	1	0	0	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	t0067	3305	1	0	0	1	0	0	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2_chr20_51381963_51547719	1/0	t0001	4754	74	4	19	24	1	25	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/1	t0002	4760	70	25	10	26	4	4	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	t0003	4759	34	0	4	26	1	3	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	t0004	4759	17	1	4	7	0	5	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	t0005	4758	12	2	6	4	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	t0006	4761	10	0	3	6	1	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	t0007	4757	7	3	2	1	1	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	t0008	4738	4	4	0	0	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	t0009	4758	4	2	2	0	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	t0010	4758	4	4	0	0	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	t0011	4756	4	4	0	0	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	t0012	4760	4	0	1	3	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	t0013	4760	4	0	0	4	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	t0014	4760	3	2	1	0	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	t0015	4750	3	3	0	0	0	0	copy fasta	NFATC2	chr20	51381963	51547719