JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NFATC2_chr20_51381963_51547719	0/0	t0016	4755	3	0	1	1	1	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	t0017	4759	3	3	0	0	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	t0018	4756	3	2	1	0	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	t0019	4757	3	0	1	2	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	t0020	4754	3	3	0	0	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	t0021	4744	3	3	0	0	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	t0022	4754	2	1	0	1	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	t0023	4758	2	2	0	0	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	t0024	4756	2	2	0	0	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	t0025	4759	2	2	0	0	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	t0026	4749	2	2	0	0	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	t0027	4759	2	0	0	1	0	1	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	t0028	4745	2	2	0	0	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	t0029	4744	2	1	1	0	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	t0030	4757	2	0	2	0	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	t0031	4757	1	0	0	0	0	1	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	t0032	4738	1	1	0	0	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	t0033	4738	1	1	0	0	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	t0034	4761	1	0	1	0	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	t0035	4750	1	1	0	0	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	t0036	4760	1	0	1	0	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	t0037	4754	1	0	0	1	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	t0038	4755	1	0	0	0	0	1	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	t0039	4755	1	0	0	1	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	t0040	4757	1	1	0	0	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	t0041	4759	1	1	0	0	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	t0042	4758	1	1	0	0	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	t0043	4760	1	0	0	0	1	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	t0044	4759	1	0	1	0	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	t0045	4760	1	1	0	0	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	t0046	4748	1	1	0	0	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	t0047	4759	1	0	1	0	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	t0048	4756	1	1	0	0	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	t0049	4758	1	0	0	1	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	t0050	4759	1	0	0	1	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	t0051	4760	1	0	0	1	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	t0052	4747	1	1	0	0	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	t0053	4760	1	1	0	0	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	t0054	4745	1	1	0	0	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	t0055	4744	1	1	0	0	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	t0056	4753	1	0	0	1	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC3_chr16_68080370_68234259	1/0	t0001	3101	48	23	8	10	0	6	copy fasta	NFATC3	chr16	68080370	68234259
NFATC3_chr16_68080370_68234259	0/0	t0002	3097	26	1	6	12	1	6	copy fasta	NFATC3	chr16	68080370	68234259
NFATC3_chr16_68080370_68234259	0/0	t0003	3102	14	8	1	4	0	1	copy fasta	NFATC3	chr16	68080370	68234259
NFATC3_chr16_68080370_68234259	0/0	t0004	3098	12	2	4	4	0	2	copy fasta	NFATC3	chr16	68080370	68234259
NFATC3_chr16_68080370_68234259	0/0	t0005	3102	10	8	0	0	0	2	copy fasta	NFATC3	chr16	68080370	68234259
NFATC3_chr16_68080370_68234259	0/0	t0006	3091	9	1	4	3	1	0	copy fasta	NFATC3	chr16	68080370	68234259
NFATC3_chr16_68080370_68234259	0/1	t0007	3100	8	2	3	0	0	2	copy fasta	NFATC3	chr16	68080370	68234259
NFATC3_chr16_68080370_68234259	0/0	t0008	3101	7	7	0	0	0	0	copy fasta	NFATC3	chr16	68080370	68234259
NFATC3_chr16_68080370_68234259	0/0	t0009	3094	7	1	4	1	1	0	copy fasta	NFATC3	chr16	68080370	68234259