Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARL4D_chr17_43393993_43406137	0/0	t0004	973	16	0	0	16	0	0	copy fasta	ARL4D	chr17	43393993	43406137
ARL4D_chr17_43393993_43406137	0/0	t0005	973	8	3	4	0	1	0	copy fasta	ARL4D	chr17	43393993	43406137
ARL4D_chr17_43393993_43406137	0/0	t0006	973	4	4	0	0	0	0	copy fasta	ARL4D	chr17	43393993	43406137
ARL4D_chr17_43393993_43406137	0/0	t0007	973	3	3	0	0	0	0	copy fasta	ARL4D	chr17	43393993	43406137
ARL4D_chr17_43393993_43406137	0/0	t0008	973	2	0	0	2	0	0	copy fasta	ARL4D	chr17	43393993	43406137
ARL4D_chr17_43393993_43406137	0/0	t0009	973	2	2	0	0	0	0	copy fasta	ARL4D	chr17	43393993	43406137
ARL4D_chr17_43393993_43406137	0/0	t0010	973	2	2	0	0	0	0	copy fasta	ARL4D	chr17	43393993	43406137
ARL4D_chr17_43393993_43406137	0/0	t0011	973	2	0	0	2	0	0	copy fasta	ARL4D	chr17	43393993	43406137
ARL4D_chr17_43393993_43406137	0/0	t0012	973	1	0	1	0	0	0	copy fasta	ARL4D	chr17	43393993	43406137
ARL4D_chr17_43393993_43406137	0/0	t0013	973	1	0	1	0	0	0	copy fasta	ARL4D	chr17	43393993	43406137
ARL4D_chr17_43393993_43406137	0/0	t0014	973	1	0	0	1	0	0	copy fasta	ARL4D	chr17	43393993	43406137
ARL4D_chr17_43393993_43406137	0/0	t0015	973	1	1	0	0	0	0	copy fasta	ARL4D	chr17	43393993	43406137
ARL4D_chr17_43393993_43406137	0/0	t0016	973	1	1	0	0	0	0	copy fasta	ARL4D	chr17	43393993	43406137
ARL4D_chr17_43393993_43406137	0/0	t0017	973	1	0	0	0	0	1	copy fasta	ARL4D	chr17	43393993	43406137
ARL4D_chr17_43393993_43406137	0/0	t0018	973	1	0	1	0	0	0	copy fasta	ARL4D	chr17	43393993	43406137
ARL5A_chr2_151793797_151833421	1/0	t0001	4725	85	19	3	55	1	6	copy fasta	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	t0002	4729	74	7	9	40	8	10	copy fasta	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	t0003	4730	56	4	17	24	2	9	copy fasta	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	t0004	4726	30	7	2	20	0	1	copy fasta	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/1	t0005	4729	21	8	3	7	2	0	copy fasta	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	t0006	4730	14	6	1	5	1	1	copy fasta	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	t0007	4729	11	3	0	8	0	0	copy fasta	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	t0008	4730	6	1	0	5	0	0	copy fasta	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	t0009	4729	4	4	0	0	0	0	copy fasta	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	t0010	4710	4	4	0	0	0	0	copy fasta	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	t0011	4725	4	0	0	4	0	0	copy fasta	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	t0012	4730	4	0	1	2	0	1	copy fasta	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	t0013	4730	3	0	0	0	0	3	copy fasta	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	t0014	4730	3	0	3	0	0	0	copy fasta	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	t0015	4728	3	1	2	0	0	0	copy fasta	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	t0016	4725	3	0	0	0	0	3	copy fasta	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	t0017	4725	3	0	0	3	0	0	copy fasta	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	t0018	4725	3	0	0	3	0	0	copy fasta	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	t0019	4727	2	1	0	1	0	0	copy fasta	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	t0020	4729	2	0	0	2	0	0	copy fasta	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	t0021	4729	2	1	1	0	0	0	copy fasta	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	t0022	4729	2	2	0	0	0	0	copy fasta	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	t0023	4731	2	0	0	2	0	0	copy fasta	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	t0024	4729	2	0	0	2	0	0	copy fasta	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	t0025	4730	1	0	0	0	0	1	copy fasta	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	t0026	4725	1	1	0	0	0	0	copy fasta	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	t0027	4725	1	1	0	0	0	0	copy fasta	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	t0028	4725	1	0	0	0	0	1	copy fasta	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	t0029	4730	1	1	0	0	0	0	copy fasta	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	t0030	4730	1	0	0	1	0	0	copy fasta	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	t0031	4730	1	1	0	0	0	0	copy fasta	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	t0032	4730	1	0	0	1	0	0	copy fasta	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	t0033	4730	1	0	0	0	0	1	copy fasta	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	t0034	4730	1	1	0	0	0	0	copy fasta	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	t0035	4730	1	0	1	0	0	0	copy fasta	ARL5A	chr2	151793797	151833421