JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NFATC3_chr16_68080370_68234259	0/0	t0010	3100	4	3	1	0	0	0	copy fasta	NFATC3	chr16	68080370	68234259
NFATC3_chr16_68080370_68234259	0/0	t0011	3105	3	3	0	0	0	0	copy fasta	NFATC3	chr16	68080370	68234259
NFATC3_chr16_68080370_68234259	0/0	t0012	3103	3	3	0	0	0	0	copy fasta	NFATC3	chr16	68080370	68234259
NFATC3_chr16_68080370_68234259	0/0	t0013	3100	3	3	0	0	0	0	copy fasta	NFATC3	chr16	68080370	68234259
NFATC3_chr16_68080370_68234259	0/0	t0014	3101	3	3	0	0	0	0	copy fasta	NFATC3	chr16	68080370	68234259
NFATC3_chr16_68080370_68234259	0/0	t0015	3102	3	3	0	0	0	0	copy fasta	NFATC3	chr16	68080370	68234259
NFATC3_chr16_68080370_68234259	0/0	t0016	3106	2	2	0	0	0	0	copy fasta	NFATC3	chr16	68080370	68234259
NFATC3_chr16_68080370_68234259	0/0	t0017	3101	2	2	0	0	0	0	copy fasta	NFATC3	chr16	68080370	68234259
NFATC3_chr16_68080370_68234259	0/0	t0018	3101	2	0	0	2	0	0	copy fasta	NFATC3	chr16	68080370	68234259
NFATC3_chr16_68080370_68234259	0/0	t0019	3098	2	1	0	0	0	1	copy fasta	NFATC3	chr16	68080370	68234259
NFATC3_chr16_68080370_68234259	0/0	t0020	3103	2	1	1	0	0	0	copy fasta	NFATC3	chr16	68080370	68234259
NFATC3_chr16_68080370_68234259	0/0	t0021	3101	1	0	1	0	0	0	copy fasta	NFATC3	chr16	68080370	68234259
NFATC3_chr16_68080370_68234259	0/0	t0022	3101	1	0	0	1	0	0	copy fasta	NFATC3	chr16	68080370	68234259
NFATC3_chr16_68080370_68234259	0/0	t0023	3098	1	0	0	1	0	0	copy fasta	NFATC3	chr16	68080370	68234259
NFATC3_chr16_68080370_68234259	0/0	t0024	3061	1	0	0	1	0	0	copy fasta	NFATC3	chr16	68080370	68234259
NFATC3_chr16_68080370_68234259	0/0	t0025	3097	1	0	0	1	0	0	copy fasta	NFATC3	chr16	68080370	68234259
NFATC3_chr16_68080370_68234259	0/0	t0026	3083	1	0	0	1	0	0	copy fasta	NFATC3	chr16	68080370	68234259
NFATC3_chr16_68080370_68234259	0/0	t0027	3101	1	0	0	0	1	0	copy fasta	NFATC3	chr16	68080370	68234259
NFATC3_chr16_68080370_68234259	0/0	t0028	3101	1	1	0	0	0	0	copy fasta	NFATC3	chr16	68080370	68234259
NFATC3_chr16_68080370_68234259	0/0	t0029	3101	1	1	0	0	0	0	copy fasta	NFATC3	chr16	68080370	68234259
NFATC3_chr16_68080370_68234259	0/0	t0030	3101	1	0	0	0	0	1	copy fasta	NFATC3	chr16	68080370	68234259
NFATC3_chr16_68080370_68234259	0/0	t0031	3101	1	0	0	1	0	0	copy fasta	NFATC3	chr16	68080370	68234259
NFATC3_chr16_68080370_68234259	0/0	t0032	3101	1	0	1	0	0	0	copy fasta	NFATC3	chr16	68080370	68234259
NFATC3_chr16_68080370_68234259	0/0	t0033	3094	1	1	0	0	0	0	copy fasta	NFATC3	chr16	68080370	68234259
NFATC3_chr16_68080370_68234259	0/0	t0034	3101	1	0	0	1	0	0	copy fasta	NFATC3	chr16	68080370	68234259
NFATC3_chr16_68080370_68234259	0/0	t0035	3091	1	0	0	0	0	1	copy fasta	NFATC3	chr16	68080370	68234259
NFATC3_chr16_68080370_68234259	0/0	t0036	3100	1	1	0	0	0	0	copy fasta	NFATC3	chr16	68080370	68234259
NFATC3_chr16_68080370_68234259	0/0	t0037	3101	1	0	0	1	0	0	copy fasta	NFATC3	chr16	68080370	68234259
NFATC3_chr16_68080370_68234259	0/0	t0038	3103	1	1	0	0	0	0	copy fasta	NFATC3	chr16	68080370	68234259
NFATC4_chr14_24363184_24384601	1/0	t0001	2054	131	51	11	62	2	4	copy fasta	NFATC4	chr14	24363184	24384601
NFATC4_chr14_24363184_24384601	0/0	t0002	2054	95	7	26	42	8	12	copy fasta	NFATC4	chr14	24363184	24384601
NFATC4_chr14_24363184_24384601	0/0	t0003	2054	61	10	3	39	1	8	copy fasta	NFATC4	chr14	24363184	24384601
NFATC4_chr14_24363184_24384601	0/0	t0004	2054	55	6	5	34	1	9	copy fasta	NFATC4	chr14	24363184	24384601
NFATC4_chr14_24363184_24384601	0/0	t0005	2054	20	1	17	0	2	0	copy fasta	NFATC4	chr14	24363184	24384601
NFATC4_chr14_24363184_24384601	0/1	t0006	2054	16	4	6	0	1	4	copy fasta	NFATC4	chr14	24363184	24384601
NFATC4_chr14_24363184_24384601	0/0	t0007	2054	4	1	1	0	0	2	copy fasta	NFATC4	chr14	24363184	24384601
NFATC4_chr14_24363184_24384601	0/0	t0008	2053	3	3	0	0	0	0	copy fasta	NFATC4	chr14	24363184	24384601
NFATC4_chr14_24363184_24384601	0/0	t0009	2054	2	1	1	0	0	0	copy fasta	NFATC4	chr14	24363184	24384601
NFATC4_chr14_24363184_24384601	0/0	t0010	2054	1	0	0	0	0	1	copy fasta	NFATC4	chr14	24363184	24384601
NFATC4_chr14_24363184_24384601	0/0	t0011	2054	1	0	0	1	0	0	copy fasta	NFATC4	chr14	24363184	24384601
NFATC4_chr14_24363184_24384601	0/0	t0012	2054	1	0	1	0	0	0	copy fasta	NFATC4	chr14	24363184	24384601
NFATC4_chr14_24363184_24384601	0/0	t0013	2054	1	0	1	0	0	0	copy fasta	NFATC4	chr14	24363184	24384601
NFATC4_chr14_24363184_24384601	0/0	t0014	2054	1	0	0	1	0	0	copy fasta	NFATC4	chr14	24363184	24384601
NFATC4_chr14_24363184_24384601	0/0	t0015	2054	1	0	0	0	1	0	copy fasta	NFATC4	chr14	24363184	24384601
NFATC4_chr14_24363184_24384601	0/0	t0016	2054	1	0	0	1	0	0	copy fasta	NFATC4	chr14	24363184	24384601
NFE2L1_chr17_48043359_48066545	0/0	t0001	2520	72	15	17	26	7	7	copy fasta	NFE2L1	chr17	48043359	48066545
NFE2L1_chr17_48043359_48066545	0/0	t0002	2521	66	5	13	39	1	8	copy fasta	NFE2L1	chr17	48043359	48066545
NFE2L1_chr17_48043359_48066545	0/0	t0003	2522	49	6	6	34	1	2	copy fasta	NFE2L1	chr17	48043359	48066545
NFE2L1_chr17_48043359_48066545	0/0	t0004	2519	35	7	4	17	2	5	copy fasta	NFE2L1	chr17	48043359	48066545
NFE2L1_chr17_48043359_48066545	0/1	t0005	2523	27	2	1	19	1	3	copy fasta	NFE2L1	chr17	48043359	48066545