JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NFE2L1_chr17_48043359_48066545	0/0	t0006	2517	23	6	1	15	0	1	copy fasta	NFE2L1	chr17	48043359	48066545
NFE2L1_chr17_48043359_48066545	0/0	t0007	2520	16	14	1	0	0	1	copy fasta	NFE2L1	chr17	48043359	48066545
NFE2L1_chr17_48043359_48066545	0/0	t0008	2518	14	6	4	2	1	1	copy fasta	NFE2L1	chr17	48043359	48066545
NFE2L1_chr17_48043359_48066545	0/0	t0009	2518	7	0	0	6	0	1	copy fasta	NFE2L1	chr17	48043359	48066545
NFE2L1_chr17_48043359_48066545	0/0	t0010	2516	7	3	0	3	0	1	copy fasta	NFE2L1	chr17	48043359	48066545
NFE2L1_chr17_48043359_48066545	0/0	t0011	2524	7	1	2	4	0	0	copy fasta	NFE2L1	chr17	48043359	48066545
NFE2L1_chr17_48043359_48066545	0/0	t0012	2513	6	1	0	5	0	0	copy fasta	NFE2L1	chr17	48043359	48066545
NFE2L1_chr17_48043359_48066545	0/0	t0013	2521	6	5	1	0	0	0	copy fasta	NFE2L1	chr17	48043359	48066545
NFE2L1_chr17_48043359_48066545	0/0	t0014	2521	6	0	3	0	3	0	copy fasta	NFE2L1	chr17	48043359	48066545
NFE2L1_chr17_48043359_48066545	0/0	t0015	2515	5	2	0	1	0	2	copy fasta	NFE2L1	chr17	48043359	48066545
NFE2L1_chr17_48043359_48066545	0/0	t0016	2519	4	2	2	0	0	0	copy fasta	NFE2L1	chr17	48043359	48066545
NFE2L1_chr17_48043359_48066545	0/0	t0017	2523	4	3	1	0	0	0	copy fasta	NFE2L1	chr17	48043359	48066545
NFE2L1_chr17_48043359_48066545	0/0	t0018	2522	4	4	0	0	0	0	copy fasta	NFE2L1	chr17	48043359	48066545
NFE2L1_chr17_48043359_48066545	0/0	t0019	2522	3	0	2	0	0	1	copy fasta	NFE2L1	chr17	48043359	48066545
NFE2L1_chr17_48043359_48066545	0/0	t0020	2506	2	2	0	0	0	0	copy fasta	NFE2L1	chr17	48043359	48066545
NFE2L1_chr17_48043359_48066545	0/0	t0021	2521	2	0	0	0	0	2	copy fasta	NFE2L1	chr17	48043359	48066545
NFE2L1_chr17_48043359_48066545	0/0	t0022	2521	2	2	0	0	0	0	copy fasta	NFE2L1	chr17	48043359	48066545
NFE2L1_chr17_48043359_48066545	0/0	t0023	2520	2	0	2	0	0	0	copy fasta	NFE2L1	chr17	48043359	48066545
NFE2L1_chr17_48043359_48066545	0/0	t0024	2522	2	0	1	0	0	1	copy fasta	NFE2L1	chr17	48043359	48066545
NFE2L1_chr17_48043359_48066545	0/0	t0025	2520	2	0	1	0	1	0	copy fasta	NFE2L1	chr17	48043359	48066545
NFE2L1_chr17_48043359_48066545	0/0	t0026	2521	1	0	1	0	0	0	copy fasta	NFE2L1	chr17	48043359	48066545
NFE2L1_chr17_48043359_48066545	0/0	t0027	2515	1	0	1	0	0	0	copy fasta	NFE2L1	chr17	48043359	48066545
NFE2L1_chr17_48043359_48066545	0/0	t0028	2513	1	1	0	0	0	0	copy fasta	NFE2L1	chr17	48043359	48066545
NFE2L1_chr17_48043359_48066545	0/0	t0029	2518	1	0	0	1	0	0	copy fasta	NFE2L1	chr17	48043359	48066545
NFE2L1_chr17_48043359_48066545	0/0	t0030	2517	1	0	0	1	0	0	copy fasta	NFE2L1	chr17	48043359	48066545
NFE2L1_chr17_48043359_48066545	0/0	t0031	2516	1	0	0	1	0	0	copy fasta	NFE2L1	chr17	48043359	48066545
NFE2L1_chr17_48043359_48066545	0/0	t0032	2514	1	0	0	0	0	1	copy fasta	NFE2L1	chr17	48043359	48066545
NFE2L1_chr17_48043359_48066545	0/0	t0033	2524	1	0	0	0	0	1	copy fasta	NFE2L1	chr17	48043359	48066545
NFE2L1_chr17_48043359_48066545	0/0	t0034	2523	1	0	0	1	0	0	copy fasta	NFE2L1	chr17	48043359	48066545
NFE2L1_chr17_48043359_48066545	0/0	t0035	2523	1	0	0	0	0	1	copy fasta	NFE2L1	chr17	48043359	48066545
NFE2L1_chr17_48043359_48066545	0/0	t0036	2521	1	1	0	0	0	0	copy fasta	NFE2L1	chr17	48043359	48066545
NFE2L1_chr17_48043359_48066545	0/0	t0037	2521	1	0	0	1	0	0	copy fasta	NFE2L1	chr17	48043359	48066545
NFE2L1_chr17_48043359_48066545	0/0	t0038	2520	1	0	1	0	0	0	copy fasta	NFE2L1	chr17	48043359	48066545
NFE2L1_chr17_48043359_48066545	0/0	t0039	2520	1	1	0	0	0	0	copy fasta	NFE2L1	chr17	48043359	48066545
NFE2L1_chr17_48043359_48066545	0/0	t0040	2520	1	0	1	0	0	0	copy fasta	NFE2L1	chr17	48043359	48066545
NFE2L1_chr17_48043359_48066545	0/0	t0041	2520	1	1	0	0	0	0	copy fasta	NFE2L1	chr17	48043359	48066545
NFE2L1_chr17_48043359_48066545	1/0	t0042	2521	1	0	0	0	0	0	copy fasta	NFE2L1	chr17	48043359	48066545
NFE2L1_chr17_48043359_48066545	0/0	t0043	2519	1	0	0	1	0	0	copy fasta	NFE2L1	chr17	48043359	48066545
NFE2L1_chr17_48043359_48066545	0/0	t0044	2519	1	0	0	1	0	0	copy fasta	NFE2L1	chr17	48043359	48066545
NFE2L1_chr17_48043359_48066545	0/0	t0045	2519	1	0	1	0	0	0	copy fasta	NFE2L1	chr17	48043359	48066545
NFE2L1_chr17_48043359_48066545	0/0	t0046	2521	1	0	0	1	0	0	copy fasta	NFE2L1	chr17	48043359	48066545
NFE2L1_chr17_48043359_48066545	0/0	t0047	2520	1	0	0	1	0	0	copy fasta	NFE2L1	chr17	48043359	48066545
NFE2L1_chr17_48043359_48066545	0/0	t0048	2520	1	0	0	0	0	1	copy fasta	NFE2L1	chr17	48043359	48066545
NFE2L1_chr17_48043359_48066545	0/0	t0049	2520	1	1	0	0	0	0	copy fasta	NFE2L1	chr17	48043359	48066545
NFE2L1_chr17_48043359_48066545	0/0	t0050	2519	1	1	0	0	0	0	copy fasta	NFE2L1	chr17	48043359	48066545
NFE2L1_chr17_48043359_48066545	0/0	t0051	2523	1	0	0	0	1	0	copy fasta	NFE2L1	chr17	48043359	48066545
NFE2L1_chr17_48043359_48066545	0/0	t0052	2522	1	0	1	0	0	0	copy fasta	NFE2L1	chr17	48043359	48066545
NFE2L2_chr2_177225308_177269727	1/1	t0001	629	187	56	44	66	7	12	copy fasta	NFE2L2	chr2	177225308	177269727
NFE2L2_chr2_177225308_177269727	0/0	t0002	626	103	13	21	50	7	12	copy fasta	NFE2L2	chr2	177225308	177269727
NFE2L2_chr2_177225308_177269727	0/0	t0003	620	8	8	0	0	0	0	copy fasta	NFE2L2	chr2	177225308	177269727