JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NFE2L2_chr2_177225308_177269727	0/0	t0004	628	6	1	4	1	0	0	copy fasta	NFE2L2	chr2	177225308	177269727
NFE2L2_chr2_177225308_177269727	0/0	t0005	629	6	6	0	0	0	0	copy fasta	NFE2L2	chr2	177225308	177269727
NFE2L2_chr2_177225308_177269727	0/0	t0006	625	4	0	0	4	0	0	copy fasta	NFE2L2	chr2	177225308	177269727
NFE2L2_chr2_177225308_177269727	0/0	t0007	629	4	4	0	0	0	0	copy fasta	NFE2L2	chr2	177225308	177269727
NFE2L2_chr2_177225308_177269727	0/0	t0008	626	2	2	0	0	0	0	copy fasta	NFE2L2	chr2	177225308	177269727
NFE2L2_chr2_177225308_177269727	0/0	t0009	629	2	2	0	0	0	0	copy fasta	NFE2L2	chr2	177225308	177269727
NFE2L2_chr2_177225308_177269727	0/0	t0010	629	1	0	1	0	0	0	copy fasta	NFE2L2	chr2	177225308	177269727
NFE2L2_chr2_177225308_177269727	0/0	t0011	620	1	1	0	0	0	0	copy fasta	NFE2L2	chr2	177225308	177269727
NFE2L2_chr2_177225308_177269727	0/0	t0012	626	1	0	0	1	0	0	copy fasta	NFE2L2	chr2	177225308	177269727
NFE2L2_chr2_177225308_177269727	0/0	t0013	629	1	1	0	0	0	0	copy fasta	NFE2L2	chr2	177225308	177269727
NFE2L3_chr7_26147198_26192137	1/1	t0001	1656	239	54	50	87	13	33	copy fasta	NFE2L3	chr7	26147198	26192137
NFE2L3_chr7_26147198_26192137	0/0	t0002	1661	69	5	9	50	0	5	copy fasta	NFE2L3	chr7	26147198	26192137
NFE2L3_chr7_26147198_26192137	0/0	t0003	1654	26	1	5	19	0	1	copy fasta	NFE2L3	chr7	26147198	26192137
NFE2L3_chr7_26147198_26192137	0/0	t0004	1656	10	0	0	9	0	1	copy fasta	NFE2L3	chr7	26147198	26192137
NFE2L3_chr7_26147198_26192137	0/0	t0005	1656	8	5	3	0	0	0	copy fasta	NFE2L3	chr7	26147198	26192137
NFE2L3_chr7_26147198_26192137	0/0	t0006	1656	7	6	1	0	0	0	copy fasta	NFE2L3	chr7	26147198	26192137
NFE2L3_chr7_26147198_26192137	0/0	t0007	1652	7	0	0	7	0	0	copy fasta	NFE2L3	chr7	26147198	26192137
NFE2L3_chr7_26147198_26192137	0/0	t0008	1656	5	2	1	0	1	1	copy fasta	NFE2L3	chr7	26147198	26192137
NFE2L3_chr7_26147198_26192137	0/0	t0009	1656	4	4	0	0	0	0	copy fasta	NFE2L3	chr7	26147198	26192137
NFE2L3_chr7_26147198_26192137	0/0	t0010	1656	3	0	0	3	0	0	copy fasta	NFE2L3	chr7	26147198	26192137
NFE2L3_chr7_26147198_26192137	0/0	t0011	1651	3	3	0	0	0	0	copy fasta	NFE2L3	chr7	26147198	26192137
NFE2L3_chr7_26147198_26192137	0/0	t0012	1656	2	2	0	0	0	0	copy fasta	NFE2L3	chr7	26147198	26192137
NFE2L3_chr7_26147198_26192137	0/0	t0013	1656	2	1	1	0	0	0	copy fasta	NFE2L3	chr7	26147198	26192137
NFE2L3_chr7_26147198_26192137	0/0	t0014	1656	2	2	0	0	0	0	copy fasta	NFE2L3	chr7	26147198	26192137
NFE2L3_chr7_26147198_26192137	0/0	t0015	1656	2	2	0	0	0	0	copy fasta	NFE2L3	chr7	26147198	26192137
NFE2L3_chr7_26147198_26192137	0/0	t0016	1654	1	0	0	1	0	0	copy fasta	NFE2L3	chr7	26147198	26192137
NFE2L3_chr7_26147198_26192137	0/0	t0017	1661	1	0	0	1	0	0	copy fasta	NFE2L3	chr7	26147198	26192137
NFE2L3_chr7_26147198_26192137	0/0	t0018	1656	1	0	0	0	0	1	copy fasta	NFE2L3	chr7	26147198	26192137
NFE2L3_chr7_26147198_26192137	0/0	t0019	1656	1	0	1	0	0	0	copy fasta	NFE2L3	chr7	26147198	26192137
NFE2L3_chr7_26147198_26192137	0/0	t0020	1656	1	0	0	0	0	1	copy fasta	NFE2L3	chr7	26147198	26192137
NFE2L3_chr7_26147198_26192137	0/0	t0021	1656	1	0	1	0	0	0	copy fasta	NFE2L3	chr7	26147198	26192137
NFE2L3_chr7_26147198_26192137	0/0	t0022	1656	1	0	0	1	0	0	copy fasta	NFE2L3	chr7	26147198	26192137
NFE2L3_chr7_26147198_26192137	0/0	t0023	1656	1	0	0	1	0	0	copy fasta	NFE2L3	chr7	26147198	26192137
NFE2L3_chr7_26147198_26192137	0/0	t0024	1656	1	1	0	0	0	0	copy fasta	NFE2L3	chr7	26147198	26192137
NFE2L3_chr7_26147198_26192137	0/0	t0025	1656	1	0	0	0	0	1	copy fasta	NFE2L3	chr7	26147198	26192137
NFE2L3_chr7_26147198_26192137	0/0	t0026	1656	1	0	0	1	0	0	copy fasta	NFE2L3	chr7	26147198	26192137
NFE2_chr12_54287111_54306015	1/1	t0001	535	343	93	76	120	16	36	copy fasta	NFE2	chr12	54287111	54306015
NFE2_chr12_54287111_54306015	0/0	t0002	535	2	2	0	0	0	0	copy fasta	NFE2	chr12	54287111	54306015
NFE2_chr12_54287111_54306015	0/0	t0003	535	1	1	0	0	0	0	copy fasta	NFE2	chr12	54287111	54306015
NFIA_chr1_61077561_61467788	0/0	t0001	7702	40	11	5	19	3	2	copy fasta	NFIA	chr1	61077561	61467788
NFIA_chr1_61077561_61467788	0/0	t0002	7701	15	2	1	9	1	2	copy fasta	NFIA	chr1	61077561	61467788
NFIA_chr1_61077561_61467788	1/1	t0003	7700	8	1	5	0	0	0	copy fasta	NFIA	chr1	61077561	61467788
NFIA_chr1_61077561_61467788	0/0	t0004	7704	5	4	1	0	0	0	copy fasta	NFIA	chr1	61077561	61467788
NFIA_chr1_61077561_61467788	0/0	t0005	7704	4	0	1	3	0	0	copy fasta	NFIA	chr1	61077561	61467788
NFIA_chr1_61077561_61467788	0/0	t0006	7702	4	2	0	2	0	0	copy fasta	NFIA	chr1	61077561	61467788
NFIA_chr1_61077561_61467788	0/0	t0007	7702	4	0	0	4	0	0	copy fasta	NFIA	chr1	61077561	61467788
NFIA_chr1_61077561_61467788	0/0	t0008	7699	3	3	0	0	0	0	copy fasta	NFIA	chr1	61077561	61467788
NFIA_chr1_61077561_61467788	0/0	t0009	7702	3	3	0	0	0	0	copy fasta	NFIA	chr1	61077561	61467788
NFIA_chr1_61077561_61467788	0/0	t0010	7703	3	3	0	0	0	0	copy fasta	NFIA	chr1	61077561	61467788
NFIA_chr1_61077561_61467788	0/0	t0011	7701	3	0	0	3	0	0	copy fasta	NFIA	chr1	61077561	61467788