JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NFIB_chr9_14076848_14319141	0/1	t0001	7091	46	2	10	30	1	2	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	t0002	7095	29	0	11	13	1	4	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	t0003	7092	14	13	1	0	0	0	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	t0004	7093	14	0	3	9	0	2	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	t0005	7091	8	0	0	8	0	0	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	t0006	7090	7	6	0	1	0	0	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	t0007	7091	7	0	0	5	0	2	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	t0008	7090	7	2	2	3	0	0	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	t0009	7092	6	6	0	0	0	0	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	t0010	7091	6	1	1	4	0	0	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	t0011	7092	6	5	1	0	0	0	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	t0012	7092	6	1	5	0	0	0	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	t0013	7095	5	1	0	2	0	2	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	t0014	7092	5	1	0	4	0	0	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	t0015	7093	5	0	1	2	1	1	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	t0016	7092	5	1	0	4	0	0	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	t0017	7091	4	3	1	0	0	0	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	t0018	7094	4	0	0	0	1	3	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	t0019	7092	3	3	0	0	0	0	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	t0020	7090	3	3	0	0	0	0	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	t0021	7094	3	0	2	1	0	0	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	t0022	7091	2	2	0	0	0	0	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	t0023	7089	2	2	0	0	0	0	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	t0024	7090	2	2	0	0	0	0	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	t0025	7091	2	0	0	2	0	0	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	t0026	7091	2	0	0	2	0	0	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	t0027	7093	2	1	0	1	0	0	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	t0028	7092	2	2	0	0	0	0	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	t0029	7091	2	2	0	0	0	0	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	t0030	7092	2	2	0	0	0	0	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	t0031	7090	2	0	0	2	0	0	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	t0032	7094	2	0	2	0	0	0	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	t0033	7091	2	0	0	0	2	0	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	t0034	7091	2	0	0	2	0	0	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	t0035	7092	2	2	0	0	0	0	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	t0036	7093	2	0	2	0	0	0	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	t0037	7091	1	0	1	0	0	0	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	t0038	7094	1	0	0	0	0	1	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	t0039	7094	1	0	0	1	0	0	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	t0040	7088	1	1	0	0	0	0	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	t0041	7092	1	1	0	0	0	0	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	t0042	7092	1	1	0	0	0	0	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	t0043	7092	1	1	0	0	0	0	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	t0044	7117	1	0	0	0	0	1	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	t0045	7092	1	1	0	0	0	0	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	t0046	7092	1	0	0	1	0	0	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	t0047	7092	1	1	0	0	0	0	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	t0048	7090	1	1	0	0	0	0	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	t0049	7092	1	1	0	0	0	0	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	t0050	7091	1	1	0	0	0	0	copy fasta	NFIB	chr9	14076848	14319141