JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NFIB_chr9_14076848_14319141	0/0	t0101	7087	1	0	1	0	0	0	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	t0102	7090	1	0	0	1	0	0	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	t0103	7092	1	0	0	0	0	1	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	t0104	7089	1	0	0	1	0	0	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	t0105	7090	1	0	1	0	0	0	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	t0106	7090	1	0	0	0	0	1	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	t0107	7091	1	1	0	0	0	0	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	t0108	7091	1	0	1	0	0	0	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	t0109	7082	1	0	0	1	0	0	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	t0110	7094	1	0	0	1	0	0	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	t0111	7094	1	0	0	1	0	0	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	t0112	7094	1	0	0	0	0	1	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	t0113	7095	1	0	0	1	0	0	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	t0114	7094	1	0	1	0	0	0	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	t0115	7094	1	0	0	0	0	1	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	t0116	7095	1	0	0	1	0	0	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	t0117	7093	1	0	1	0	0	0	copy fasta	NFIB	chr9	14076848	14319141
NFIC_chr19_3361583_3474217	0/0	t0001	6505	11	1	2	7	1	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	1/0	t0002	6503	5	0	0	3	0	1	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/1	t0003	6520	5	0	0	4	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0004	6504	3	0	0	1	1	1	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0005	6507	3	1	0	1	0	1	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0006	6506	3	3	0	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0007	6505	3	0	2	1	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0008	6507	3	0	1	2	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0009	6539	3	0	0	3	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0010	6498	2	1	1	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0011	6504	2	0	0	0	0	2	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0012	6501	2	0	1	1	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0013	6509	2	0	2	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0014	6506	2	0	0	0	1	1	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0015	6516	2	0	1	1	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0016	6518	2	0	0	1	1	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0017	6522	2	0	0	2	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0018	6527	2	0	0	2	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0019	6524	2	0	0	2	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0020	6527	2	0	0	2	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0021	6526	2	2	0	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0022	6499	2	2	0	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0023	6504	2	0	0	0	0	2	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0024	6504	2	1	1	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0025	6503	2	0	1	0	0	1	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0026	6513	1	0	1	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0027	6510	1	0	0	1	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0028	6505	1	0	0	0	0	1	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0029	6548	1	0	1	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0030	6526	1	1	0	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0031	6532	1	1	0	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0032	6523	1	0	1	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0033	6528	1	1	0	0	0	0	copy fasta	NFIC	chr19	3361583	3474217