JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
NFIC_chr19_3361583_3474217	0/0	t0034	6523	1	0	1	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0035	6518	1	1	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0036	6517	1	1	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0037	6518	1	1	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0038	6528	1	1	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0039	6517	1	1	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0040	6517	1	1	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0041	6519	1	1	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0042	6523	1	1	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0043	6527	1	0	1	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0044	6521	1	1	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0045	6511	1	1	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0046	6515	1	1	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0047	6517	1	1	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0048	6521	1	1	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0049	6506	1	1	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0050	6532	1	1	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0051	6520	1	1	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0052	6520	1	1	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0053	6517	1	1	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0054	6517	1	1	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0055	6519	1	1	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0056	6518	1	1	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0057	6517	1	1	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0058	6521	1	1	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0059	6522	1	1	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0060	6505	1	0	1	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0061	6500	1	0	0	0	1	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0062	6505	1	0	1	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0063	6509	1	0	0	0	1	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0064	6503	1	0	0	1	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0065	6503	1	0	0	0	1	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0066	6511	1	0	0	1	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0067	6519	1	0	0	1	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0068	6546	1	0	0	1	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0069	6505	1	0	1	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0070	6504	1	0	0	1	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0071	6518	1	0	0	0	1	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0072	6519	1	1	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0073	6513	1	1	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0074	6525	1	1	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0075	6511	1	1	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0076	6502	1	0	0	0	1	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0077	6527	1	1	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0078	6520	1	1	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0079	6520	1	1	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0080	6517	1	1	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0081	6524	1	0	1	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0082	6523	1	0	1	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0083	6519	1	1	0	0	0	copy fasta	NFIC	chr19	3361583	3474217