Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARL5A_chr2_151793797_151833421	0/0	t0036	4732	1	0	0	1	0	0	copy fasta	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	t0037	4730	1	0	0	1	0	0	copy fasta	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	t0038	4730	1	1	0	0	0	0	copy fasta	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	t0039	4730	1	0	0	1	0	0	copy fasta	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	t0040	4729	1	0	1	0	0	0	copy fasta	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	t0041	4711	1	1	0	0	0	0	copy fasta	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	t0042	4729	1	1	0	0	0	0	copy fasta	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	t0043	4729	1	1	0	0	0	0	copy fasta	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	t0044	4729	1	1	0	0	0	0	copy fasta	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	t0045	4729	1	1	0	0	0	0	copy fasta	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	t0046	4729	1	1	0	0	0	0	copy fasta	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	t0047	4729	1	0	0	0	0	1	copy fasta	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	t0048	4726	1	0	0	0	0	1	copy fasta	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	t0049	4729	1	0	0	1	0	0	copy fasta	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	t0050	4729	1	1	0	0	0	0	copy fasta	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	t0051	4729	1	1	0	0	0	0	copy fasta	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	t0052	4729	1	1	0	0	0	0	copy fasta	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	t0053	4729	1	1	0	0	0	0	copy fasta	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	t0054	4725	1	0	0	1	0	0	copy fasta	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	t0055	4725	1	1	0	0	0	0	copy fasta	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	t0056	4725	1	0	1	0	0	0	copy fasta	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	t0057	4728	1	0	1	0	0	0	copy fasta	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	t0058	4725	1	0	0	0	0	1	copy fasta	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	t0059	4728	1	1	0	0	0	0	copy fasta	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	t0060	4728	1	1	0	0	0	0	copy fasta	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	t0061	4729	1	1	0	0	0	0	copy fasta	ARL5A	chr2	151793797	151833421
ARL5B_chr10_18654431_18686639	0/1	t0001	6631	111	21	22	55	3	9	copy fasta	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	t0002	6630	64	23	16	18	0	7	copy fasta	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	t0003	6631	57	0	0	55	0	2	copy fasta	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	1/0	t0004	6631	51	21	19	3	1	6	copy fasta	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	t0005	6630	45	1	2	33	0	9	copy fasta	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	t0006	6631	9	0	5	0	3	1	copy fasta	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	t0007	6631	9	0	5	0	3	1	copy fasta	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	t0008	6631	8	0	0	7	0	1	copy fasta	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	t0009	6631	6	1	0	2	0	3	copy fasta	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	t0010	6631	5	2	3	0	0	0	copy fasta	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	t0011	6631	5	0	0	5	0	0	copy fasta	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	t0012	6631	4	1	3	0	0	0	copy fasta	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	t0013	6631	4	0	0	4	0	0	copy fasta	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	t0014	6631	4	4	0	0	0	0	copy fasta	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	t0015	6630	3	0	1	0	1	1	copy fasta	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	t0016	6630	3	0	0	3	0	0	copy fasta	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	t0017	6630	3	0	0	3	0	0	copy fasta	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	t0018	6631	3	0	0	3	0	0	copy fasta	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	t0019	6631	3	3	0	0	0	0	copy fasta	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	t0020	6631	2	0	0	2	0	0	copy fasta	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	t0021	6631	2	2	0	0	0	0	copy fasta	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	t0022	6631	2	0	2	0	0	0	copy fasta	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	t0023	6631	2	2	0	0	0	0	copy fasta	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	t0024	6631	2	0	2	0	0	0	copy fasta	ARL5B	chr10	18654431	18686639