JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NFIC_chr19_3361583_3474217	0/0	t0184	6514	1	0	0	1	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0185	6514	1	0	1	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0186	6515	1	0	0	1	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0187	6519	1	0	0	1	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0188	6521	1	0	0	0	1	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0189	6523	1	0	0	1	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0190	6531	1	0	0	1	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0191	6520	1	0	0	0	0	1	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0192	6522	1	0	0	1	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0193	6508	1	0	0	0	0	1	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0194	6507	1	0	1	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0195	6524	1	0	1	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0196	6526	1	1	0	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0197	6520	1	1	0	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0198	6518	1	1	0	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0199	6523	1	1	0	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0200	6517	1	1	0	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0201	6529	1	1	0	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0202	6524	1	1	0	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0203	6522	1	1	0	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0204	6524	1	1	0	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0205	6517	1	1	0	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0206	6507	1	1	0	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0207	6530	1	1	0	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0208	6520	1	1	0	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0209	6510	1	1	0	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0210	6525	1	1	0	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0211	6531	1	0	0	1	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0212	6527	1	0	0	0	0	1	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0213	6541	1	0	0	1	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0214	6547	1	0	0	1	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0215	6503	1	0	0	1	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0216	6537	1	0	0	1	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0217	6501	1	0	0	1	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0218	6544	1	0	0	1	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0219	6532	1	1	0	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0220	6543	1	0	0	1	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0221	6506	1	1	0	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0222	6513	1	0	0	1	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0223	6525	1	1	0	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0224	6507	1	0	0	0	1	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0225	6517	1	1	0	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0226	6522	1	0	0	0	1	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0227	6504	1	0	0	0	0	1	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0228	6511	1	0	1	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0229	6518	1	1	0	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0230	6502	1	1	0	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0231	6514	1	1	0	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0232	6522	1	1	0	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	t0233	6516	1	1	0	0	0	0	copy fasta	NFIC	chr19	3361583	3474217