JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NFILZ_chr19_8625633_8686151	0/0	t0024	4510	3	1	0	1	0	1	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0025	4502	3	0	0	3	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0026	4457	3	1	0	0	0	2	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0027	4464	3	1	2	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0028	4456	3	0	1	2	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0029	4486	3	0	0	3	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0030	4481	3	0	0	3	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0031	4486	3	3	0	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0032	4489	2	2	0	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0033	4617	2	0	0	0	0	2	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0034	4618	2	0	2	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0035	4514	2	0	1	0	1	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0036	4509	2	0	0	2	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0037	4505	2	0	0	2	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0038	4457	2	2	0	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0039	4502	2	0	0	2	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0040	4453	2	0	2	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0041	4449	2	0	0	0	1	1	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0042	4459	2	2	0	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0043	4461	2	0	0	2	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0044	4460	2	0	1	0	0	1	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0045	4421	2	0	0	2	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0046	4492	2	0	2	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0047	4485	2	0	2	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0048	4489	2	0	0	2	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0049	4485	2	0	0	2	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0050	4481	2	0	0	2	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0051	4493	2	2	0	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0052	4481	2	2	0	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0053	4614	1	1	0	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0054	4479	1	1	0	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0055	4468	1	1	0	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0056	4622	1	1	0	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0057	4457	1	1	0	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0058	4463	1	1	0	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0059	4485	1	1	0	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0060	4481	1	1	0	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0061	4464	1	0	0	0	0	1	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0062	4455	1	1	0	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0063	4616	1	1	0	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0064	4617	1	1	0	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0065	4626	1	0	0	1	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0066	4622	1	0	0	1	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0067	4622	1	0	0	1	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0068	4625	1	0	0	1	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0069	4623	1	1	0	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0070	4622	1	1	0	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0071	4625	1	0	0	1	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0072	4618	1	0	0	1	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0073	4614	1	0	0	0	0	1	copy fasta	NFILZ	chr19	8625633	8686151