JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NFILZ_chr19_8625633_8686151	0/0	t0074	4616	1	0	0	1	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0075	4615	1	1	0	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0076	4622	1	0	0	1	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0077	4618	1	0	0	1	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0078	4614	1	0	0	1	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0079	4609	1	0	0	1	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0080	4619	1	1	0	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0081	4606	1	0	0	1	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0082	4611	1	1	0	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0083	4616	1	0	1	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0084	4610	1	0	0	0	1	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0085	4619	1	1	0	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0086	4606	1	0	0	0	0	1	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0087	4613	1	0	1	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	1/0	t0088	4039	1	0	0	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0089	4508	1	0	1	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0090	4515	1	0	0	1	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0091	4508	1	0	0	1	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0092	4507	1	0	1	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0093	4509	1	1	0	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0094	4483	1	1	0	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0095	4511	1	0	0	1	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0096	4511	1	0	0	1	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0097	4511	1	0	0	0	0	1	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0098	4513	1	0	0	1	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0099	4507	1	0	1	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0100	4509	1	1	0	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0101	4507	1	0	0	0	0	1	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0102	4503	1	0	1	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/1	t0103	4495	1	0	0	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0104	4506	1	0	0	1	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0105	4507	1	0	1	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0106	4505	1	0	0	1	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0107	4505	1	0	1	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0108	4457	1	1	0	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0109	4454	1	1	0	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0110	4450	1	1	0	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0111	4479	1	1	0	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0112	4461	1	0	0	0	0	1	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0113	4447	1	1	0	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0114	4449	1	1	0	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0115	4472	1	1	0	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0116	4525	1	1	0	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0117	4516	1	1	0	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0118	4509	1	0	1	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0119	4510	1	0	0	1	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0120	4505	1	1	0	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0121	4503	1	0	0	1	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0122	4506	1	0	0	1	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	t0123	4499	1	0	1	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151