JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NFIX_chr19_12990475_13103796	0/0	t0006	4511	4	4	0	0	0	0	copy fasta	NFIX	chr19	12990475	13103796
NFIX_chr19_12990475_13103796	0/0	t0007	4512	3	0	0	3	0	0	copy fasta	NFIX	chr19	12990475	13103796
NFIX_chr19_12990475_13103796	0/0	t0008	4512	3	1	0	2	0	0	copy fasta	NFIX	chr19	12990475	13103796
NFIX_chr19_12990475_13103796	0/0	t0009	4511	3	3	0	0	0	0	copy fasta	NFIX	chr19	12990475	13103796
NFIX_chr19_12990475_13103796	0/0	t0010	4513	2	0	0	1	0	1	copy fasta	NFIX	chr19	12990475	13103796
NFIX_chr19_12990475_13103796	0/0	t0011	4510	2	0	2	0	0	0	copy fasta	NFIX	chr19	12990475	13103796
NFIX_chr19_12990475_13103796	0/0	t0012	4507	2	2	0	0	0	0	copy fasta	NFIX	chr19	12990475	13103796
NFIX_chr19_12990475_13103796	0/0	t0013	4512	2	0	2	0	0	0	copy fasta	NFIX	chr19	12990475	13103796
NFIX_chr19_12990475_13103796	0/0	t0014	4511	2	2	0	0	0	0	copy fasta	NFIX	chr19	12990475	13103796
NFIX_chr19_12990475_13103796	0/0	t0015	4511	1	0	0	0	0	1	copy fasta	NFIX	chr19	12990475	13103796
NFIX_chr19_12990475_13103796	0/0	t0016	4511	1	0	0	0	0	1	copy fasta	NFIX	chr19	12990475	13103796
NFIX_chr19_12990475_13103796	0/0	t0017	4511	1	0	0	0	0	1	copy fasta	NFIX	chr19	12990475	13103796
NFIX_chr19_12990475_13103796	0/0	t0018	4511	1	0	1	0	0	0	copy fasta	NFIX	chr19	12990475	13103796
NFIX_chr19_12990475_13103796	0/0	t0019	4510	1	1	0	0	0	0	copy fasta	NFIX	chr19	12990475	13103796
NFIX_chr19_12990475_13103796	0/0	t0020	4510	1	1	0	0	0	0	copy fasta	NFIX	chr19	12990475	13103796
NFIX_chr19_12990475_13103796	0/0	t0021	4511	1	1	0	0	0	0	copy fasta	NFIX	chr19	12990475	13103796
NFIX_chr19_12990475_13103796	0/0	t0022	4511	1	0	0	1	0	0	copy fasta	NFIX	chr19	12990475	13103796
NFIX_chr19_12990475_13103796	0/0	t0023	4511	1	1	0	0	0	0	copy fasta	NFIX	chr19	12990475	13103796
NFIX_chr19_12990475_13103796	0/0	t0024	4511	1	1	0	0	0	0	copy fasta	NFIX	chr19	12990475	13103796
NFIX_chr19_12990475_13103796	0/0	t0025	4511	1	0	1	0	0	0	copy fasta	NFIX	chr19	12990475	13103796
NFIX_chr19_12990475_13103796	0/0	t0026	4511	1	0	1	0	0	0	copy fasta	NFIX	chr19	12990475	13103796
NFIX_chr19_12990475_13103796	0/0	t0027	4511	1	1	0	0	0	0	copy fasta	NFIX	chr19	12990475	13103796
NFIX_chr19_12990475_13103796	0/0	t0028	4511	1	0	1	0	0	0	copy fasta	NFIX	chr19	12990475	13103796
NFIX_chr19_12990475_13103796	0/0	t0029	4511	1	1	0	0	0	0	copy fasta	NFIX	chr19	12990475	13103796
NFIX_chr19_12990475_13103796	0/0	t0030	4510	1	1	0	0	0	0	copy fasta	NFIX	chr19	12990475	13103796
NFIX_chr19_12990475_13103796	0/0	t0031	4510	1	0	1	0	0	0	copy fasta	NFIX	chr19	12990475	13103796
NFIX_chr19_12990475_13103796	0/0	t0032	4511	1	1	0	0	0	0	copy fasta	NFIX	chr19	12990475	13103796
NFIX_chr19_12990475_13103796	0/0	t0033	4507	1	1	0	0	0	0	copy fasta	NFIX	chr19	12990475	13103796
NFIX_chr19_12990475_13103796	0/0	t0034	4511	1	0	0	1	0	0	copy fasta	NFIX	chr19	12990475	13103796
NFIX_chr19_12990475_13103796	0/0	t0035	4510	1	1	0	0	0	0	copy fasta	NFIX	chr19	12990475	13103796
NFIX_chr19_12990475_13103796	0/0	t0036	4511	1	1	0	0	0	0	copy fasta	NFIX	chr19	12990475	13103796
NFKB1_chr4_102496359_102622302	0/1	t0001	1148	119	26	24	48	4	16	copy fasta	NFKB1	chr4	102496359	102622302
NFKB1_chr4_102496359_102622302	0/0	t0002	1149	102	12	24	47	4	15	copy fasta	NFKB1	chr4	102496359	102622302
NFKB1_chr4_102496359_102622302	1/0	t0003	1146	40	8	2	24	3	2	copy fasta	NFKB1	chr4	102496359	102622302
NFKB1_chr4_102496359_102622302	0/0	t0004	1147	36	24	6	1	1	4	copy fasta	NFKB1	chr4	102496359	102622302
NFKB1_chr4_102496359_102622302	0/0	t0005	1150	18	4	0	13	0	1	copy fasta	NFKB1	chr4	102496359	102622302
NFKB1_chr4_102496359_102622302	0/0	t0006	1145	6	6	0	0	0	0	copy fasta	NFKB1	chr4	102496359	102622302
NFKB1_chr4_102496359_102622302	0/0	t0007	1147	1	1	0	0	0	0	copy fasta	NFKB1	chr4	102496359	102622302
NFKB1_chr4_102496359_102622302	0/0	t0008	1146	1	1	0	0	0	0	copy fasta	NFKB1	chr4	102496359	102622302
NFKB1_chr4_102496359_102622302	0/0	t0009	1145	1	1	0	0	0	0	copy fasta	NFKB1	chr4	102496359	102622302
NFKB1_chr4_102496359_102622302	0/0	t0010	1148	1	0	0	1	0	0	copy fasta	NFKB1	chr4	102496359	102622302
NFKB1_chr4_102496359_102622302	0/0	t0011	1145	1	1	0	0	0	0	copy fasta	NFKB1	chr4	102496359	102622302
NFKB1_chr4_102496359_102622302	0/0	t0012	1149	1	0	0	1	0	0	copy fasta	NFKB1	chr4	102496359	102622302
NFKB1_chr4_102496359_102622302	0/0	t0013	1150	1	0	0	1	0	0	copy fasta	NFKB1	chr4	102496359	102622302
NFKB2_chr10_102390705_102407524	1/1	t0001	313	424	96	76	192	16	42	copy fasta	NFKB2	chr10	102390705	102407524
NFKBIA_chr14_35396513_35409749	1/1	t0001	606	184	28	32	94	12	16	copy fasta	NFKBIA	chr14	35396513	35409749
NFKBIA_chr14_35396513_35409749	0/0	t0002	606	177	64	22	63	5	23	copy fasta	NFKBIA	chr14	35396513	35409749
NFKBIA_chr14_35396513_35409749	0/0	t0003	603	49	0	1	46	1	1	copy fasta	NFKBIA	chr14	35396513	35409749
NFKBIA_chr14_35396513_35409749	0/0	t0004	603	26	3	21	0	0	2	copy fasta	NFKBIA	chr14	35396513	35409749
NFKBIA_chr14_35396513_35409749	0/0	t0005	608	12	2	1	8	0	1	copy fasta	NFKBIA	chr14	35396513	35409749