JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NFKBIA_chr14_35396513_35409749	0/0	t0006	606	6	0	1	4	0	1	copy fasta	NFKBIA	chr14	35396513	35409749
NFKBIA_chr14_35396513_35409749	0/0	t0007	606	2	2	0	0	0	0	copy fasta	NFKBIA	chr14	35396513	35409749
NFKBIA_chr14_35396513_35409749	0/0	t0008	603	1	1	0	0	0	0	copy fasta	NFKBIA	chr14	35396513	35409749
NFKBIA_chr14_35396513_35409749	0/0	t0009	606	1	0	0	1	0	0	copy fasta	NFKBIA	chr14	35396513	35409749
NFKBIA_chr14_35396513_35409749	0/0	t0010	603	1	0	0	1	0	0	copy fasta	NFKBIA	chr14	35396513	35409749
NFKBIA_chr14_35396513_35409749	0/0	t0011	603	1	0	0	1	0	0	copy fasta	NFKBIA	chr14	35396513	35409749
NFKBIA_chr14_35396513_35409749	0/0	t0012	606	1	0	1	0	0	0	copy fasta	NFKBIA	chr14	35396513	35409749
NFKBIA_chr14_35396513_35409749	0/0	t0013	606	1	0	1	0	0	0	copy fasta	NFKBIA	chr14	35396513	35409749
NFKBIB_chr19_38894969_38913889	1/1	t0001	122	454	98	82	208	16	48	copy fasta	NFKBIB	chr19	38894969	38913889
NFKBIE_chr6_44253166_44270551	1/0	t0001	1259	281	67	52	115	14	32	copy fasta	NFKBIE	chr6	44253166	44270551
NFKBIE_chr6_44253166_44270551	0/0	t0002	1259	129	6	17	92	2	12	copy fasta	NFKBIE	chr6	44253166	44270551
NFKBIE_chr6_44253166_44270551	0/0	t0003	1259	8	0	0	8	0	0	copy fasta	NFKBIE	chr6	44253166	44270551
NFKBIE_chr6_44253166_44270551	0/0	t0004	1259	6	6	0	0	0	0	copy fasta	NFKBIE	chr6	44253166	44270551
NFKBIE_chr6_44253166_44270551	0/1	t0005	1259	5	2	1	0	1	0	copy fasta	NFKBIE	chr6	44253166	44270551
NFKBIE_chr6_44253166_44270551	0/0	t0006	1259	4	3	1	0	0	0	copy fasta	NFKBIE	chr6	44253166	44270551
NFKBIE_chr6_44253166_44270551	0/0	t0007	1259	3	0	2	0	1	0	copy fasta	NFKBIE	chr6	44253166	44270551
NFKBIE_chr6_44253166_44270551	0/0	t0008	1259	2	2	0	0	0	0	copy fasta	NFKBIE	chr6	44253166	44270551
NFKBIE_chr6_44253166_44270551	0/0	t0009	1259	2	2	0	0	0	0	copy fasta	NFKBIE	chr6	44253166	44270551
NFKBIE_chr6_44253166_44270551	0/0	t0010	1259	2	2	0	0	0	0	copy fasta	NFKBIE	chr6	44253166	44270551
NFKBIE_chr6_44253166_44270551	0/0	t0011	1259	2	2	0	0	0	0	copy fasta	NFKBIE	chr6	44253166	44270551
NFKBIE_chr6_44253166_44270551	0/0	t0012	1259	1	0	1	0	0	0	copy fasta	NFKBIE	chr6	44253166	44270551
NFKBIE_chr6_44253166_44270551	0/0	t0013	1259	1	0	1	0	0	0	copy fasta	NFKBIE	chr6	44253166	44270551
NFKBIE_chr6_44253166_44270551	0/0	t0014	1259	1	0	0	1	0	0	copy fasta	NFKBIE	chr6	44253166	44270551
NFKBIE_chr6_44253166_44270551	0/0	t0015	1259	1	0	0	1	0	0	copy fasta	NFKBIE	chr6	44253166	44270551
NFKBIE_chr6_44253166_44270551	0/0	t0016	1259	1	0	1	0	0	0	copy fasta	NFKBIE	chr6	44253166	44270551
NFKBIE_chr6_44253166_44270551	0/0	t0017	1259	1	0	1	0	0	0	copy fasta	NFKBIE	chr6	44253166	44270551
NFKBIE_chr6_44253166_44270551	0/0	t0018	1241	1	0	0	1	0	0	copy fasta	NFKBIE	chr6	44253166	44270551
NFKBIE_chr6_44253166_44270551	0/0	t0019	1259	1	0	1	0	0	0	copy fasta	NFKBIE	chr6	44253166	44270551
NFKBIE_chr6_44253166_44270551	0/0	t0020	1259	1	0	0	1	0	0	copy fasta	NFKBIE	chr6	44253166	44270551
NFKBIE_chr6_44253166_44270551	0/0	t0021	1259	1	0	0	1	0	0	copy fasta	NFKBIE	chr6	44253166	44270551
NFKBIL1_chr6_31542608_31563829	0/1	t0001	306	440	96	79	202	17	45	copy fasta	NFKBIL1	chr6	31542608	31563829
NFKBIL1_chr6_31542608_31563829	0/0	t0002	306	7	0	5	0	1	1	copy fasta	NFKBIL1	chr6	31542608	31563829
NFKBIL1_chr6_31542608_31563829	0/0	t0003	306	2	0	2	0	0	0	copy fasta	NFKBIL1	chr6	31542608	31563829
NFKBIZ_chr3_101844514_101866022	1/0	t0001	1767	95	9	12	65	3	5	copy fasta	NFKBIZ	chr3	101844514	101866022
NFKBIZ_chr3_101844514_101866022	0/0	t0002	1766	95	18	23	38	3	13	copy fasta	NFKBIZ	chr3	101844514	101866022
NFKBIZ_chr3_101844514_101866022	0/0	t0003	1767	59	17	8	29	1	4	copy fasta	NFKBIZ	chr3	101844514	101866022
NFKBIZ_chr3_101844514_101866022	0/1	t0004	1766	45	10	16	5	4	9	copy fasta	NFKBIZ	chr3	101844514	101866022
NFKBIZ_chr3_101844514_101866022	0/0	t0005	1766	32	0	0	31	0	1	copy fasta	NFKBIZ	chr3	101844514	101866022
NFKBIZ_chr3_101844514_101866022	0/0	t0006	1767	22	16	4	0	1	1	copy fasta	NFKBIZ	chr3	101844514	101866022
NFKBIZ_chr3_101844514_101866022	0/0	t0007	1766	12	4	2	6	0	0	copy fasta	NFKBIZ	chr3	101844514	101866022
NFKBIZ_chr3_101844514_101866022	0/0	t0008	1765	11	0	3	6	1	1	copy fasta	NFKBIZ	chr3	101844514	101866022
NFKBIZ_chr3_101844514_101866022	0/0	t0009	1765	10	9	1	0	0	0	copy fasta	NFKBIZ	chr3	101844514	101866022
NFKBIZ_chr3_101844514_101866022	0/0	t0010	1766	4	0	1	0	1	2	copy fasta	NFKBIZ	chr3	101844514	101866022
NFKBIZ_chr3_101844514_101866022	0/0	t0011	1767	2	2	0	0	0	0	copy fasta	NFKBIZ	chr3	101844514	101866022
NFKBIZ_chr3_101844514_101866022	0/0	t0012	1767	2	0	0	0	0	2	copy fasta	NFKBIZ	chr3	101844514	101866022
NFKBIZ_chr3_101844514_101866022	0/0	t0013	1767	2	0	2	0	0	0	copy fasta	NFKBIZ	chr3	101844514	101866022
NFKBIZ_chr3_101844514_101866022	0/0	t0014	1766	2	2	0	0	0	0	copy fasta	NFKBIZ	chr3	101844514	101866022
NFKBIZ_chr3_101844514_101866022	0/0	t0015	1766	1	0	1	0	0	0	copy fasta	NFKBIZ	chr3	101844514	101866022
NFKBIZ_chr3_101844514_101866022	0/0	t0016	1767	1	1	0	0	0	0	copy fasta	NFKBIZ	chr3	101844514	101866022
NFKBIZ_chr3_101844514_101866022	0/0	t0017	1766	1	0	0	1	0	0	copy fasta	NFKBIZ	chr3	101844514	101866022