JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NFKBIZ_chr3_101844514_101866022	0/0	t0018	1765	1	0	0	1	0	0	copy fasta	NFKBIZ	chr3	101844514	101866022
NFKBIZ_chr3_101844514_101866022	0/0	t0019	1767	1	0	0	1	0	0	copy fasta	NFKBIZ	chr3	101844514	101866022
NFKBIZ_chr3_101844514_101866022	0/0	t0020	1767	1	1	0	0	0	0	copy fasta	NFKBIZ	chr3	101844514	101866022
NFKBIZ_chr3_101844514_101866022	0/0	t0021	1766	1	0	1	0	0	0	copy fasta	NFKBIZ	chr3	101844514	101866022
NFKBIZ_chr3_101844514_101866022	0/0	t0022	1766	1	0	1	0	0	0	copy fasta	NFKBIZ	chr3	101844514	101866022
NFKBIZ_chr3_101844514_101866022	0/0	t0023	1765	1	0	1	0	0	0	copy fasta	NFKBIZ	chr3	101844514	101866022
NFKBIZ_chr3_101844514_101866022	0/0	t0024	1766	1	1	0	0	0	0	copy fasta	NFKBIZ	chr3	101844514	101866022
NFKBIZ_chr3_101844514_101866022	0/0	t0025	1766	1	1	0	0	0	0	copy fasta	NFKBIZ	chr3	101844514	101866022
NFKBIZ_chr3_101844514_101866022	0/0	t0026	1767	1	1	0	0	0	0	copy fasta	NFKBIZ	chr3	101844514	101866022
NFKBIZ_chr3_101844514_101866022	0/0	t0027	1766	1	1	0	0	0	0	copy fasta	NFKBIZ	chr3	101844514	101866022
NFKBIZ_chr3_101844514_101866022	0/0	t0028	1767	1	1	0	0	0	0	copy fasta	NFKBIZ	chr3	101844514	101866022
NFKBIZ_chr3_101844514_101866022	0/0	t0029	1766	1	0	0	1	0	0	copy fasta	NFKBIZ	chr3	101844514	101866022
NFKBIZ_chr3_101844514_101866022	0/0	t0030	1767	1	0	0	1	0	0	copy fasta	NFKBIZ	chr3	101844514	101866022
NFKBIZ_chr3_101844514_101866022	0/0	t0031	1767	1	0	0	1	0	0	copy fasta	NFKBIZ	chr3	101844514	101866022
NFRKB_chr11_129858636_129900578	0/1	t0001	1274	390	86	69	186	15	33	copy fasta	NFRKB	chr11	129858636	129900578
NFRKB_chr11_129858636_129900578	0/0	t0002	1274	5	5	0	0	0	0	copy fasta	NFRKB	chr11	129858636	129900578
NFRKB_chr11_129858636_129900578	0/0	t0003	1274	2	2	0	0	0	0	copy fasta	NFRKB	chr11	129858636	129900578
NFRKB_chr11_129858636_129900578	1/0	t0004	1274	2	0	1	0	0	0	copy fasta	NFRKB	chr11	129858636	129900578
NFRKB_chr11_129858636_129900578	0/0	t0005	1274	1	1	0	0	0	0	copy fasta	NFRKB	chr11	129858636	129900578
NFRKB_chr11_129858636_129900578	0/0	t0006	1274	1	1	0	0	0	0	copy fasta	NFRKB	chr11	129858636	129900578
NFRKB_chr11_129858636_129900578	0/0	t0007	1274	1	0	0	1	0	0	copy fasta	NFRKB	chr11	129858636	129900578
NFRKB_chr11_129858636_129900578	0/0	t0008	1274	1	0	0	1	0	0	copy fasta	NFRKB	chr11	129858636	129900578
NFRKB_chr11_129858636_129900578	0/0	t0009	1274	1	0	1	0	0	0	copy fasta	NFRKB	chr11	129858636	129900578
NFRKB_chr11_129858636_129900578	0/0	t0010	1274	1	0	0	1	0	0	copy fasta	NFRKB	chr11	129858636	129900578
NFRKB_chr11_129858636_129900578	0/0	t0011	1274	1	0	0	1	0	0	copy fasta	NFRKB	chr11	129858636	129900578
NFRKB_chr11_129858636_129900578	0/0	t0012	1287	1	1	0	0	0	0	copy fasta	NFRKB	chr11	129858636	129900578
NFRKB_chr11_129858636_129900578	0/0	t0013	1274	1	0	0	0	1	0	copy fasta	NFRKB	chr11	129858636	129900578
NFRKB_chr11_129858636_129900578	0/0	t0014	1274	1	0	0	0	0	1	copy fasta	NFRKB	chr11	129858636	129900578
NFRKB_chr11_129858636_129900578	0/0	t0015	1274	1	0	1	0	0	0	copy fasta	NFRKB	chr11	129858636	129900578
NFS1_chr20_35663052_35704352	1/1	t0001	1635	186	59	32	69	10	14	copy fasta	NFS1	chr20	35663052	35704352
NFS1_chr20_35663052_35704352	0/0	t0002	1635	43	8	11	18	2	4	copy fasta	NFS1	chr20	35663052	35704352
NFS1_chr20_35663052_35704352	0/0	t0003	1635	31	10	1	6	2	12	copy fasta	NFS1	chr20	35663052	35704352
NFS1_chr20_35663052_35704352	0/0	t0004	1635	2	2	0	0	0	0	copy fasta	NFS1	chr20	35663052	35704352
NFS1_chr20_35663052_35704352	0/0	t0005	1635	2	2	0	0	0	0	copy fasta	NFS1	chr20	35663052	35704352
NFS1_chr20_35663052_35704352	0/0	t0006	1635	1	0	0	1	0	0	copy fasta	NFS1	chr20	35663052	35704352
NFS1_chr20_35663052_35704352	0/0	t0007	1635	1	1	0	0	0	0	copy fasta	NFS1	chr20	35663052	35704352
NFS1_chr20_35663052_35704352	0/0	t0008	1635	1	1	0	0	0	0	copy fasta	NFS1	chr20	35663052	35704352
NFS1_chr20_35663052_35704352	0/0	t0009	1635	1	1	0	0	0	0	copy fasta	NFS1	chr20	35663052	35704352
NFU1_chr2_69391126_69442435	1/1	t0001	134	367	91	60	172	10	32	copy fasta	NFU1	chr2	69391126	69442435
NFU1_chr2_69391126_69442435	0/0	t0002	134	1	1	0	0	0	0	copy fasta	NFU1	chr2	69391126	69442435
NFX1_chr9_33285516_33376157	0/1	t0001	1237	214	58	32	99	9	15	copy fasta	NFX1	chr9	33285516	33376157
NFX1_chr9_33285516_33376157	1/0	t0002	1237	75	14	17	37	1	5	copy fasta	NFX1	chr9	33285516	33376157
NFX1_chr9_33285516_33376157	0/0	t0003	1237	6	5	1	0	0	0	copy fasta	NFX1	chr9	33285516	33376157
NFX1_chr9_33285516_33376157	0/0	t0004	1237	2	2	0	0	0	0	copy fasta	NFX1	chr9	33285516	33376157
NFX1_chr9_33285516_33376157	0/0	t0005	1237	1	0	1	0	0	0	copy fasta	NFX1	chr9	33285516	33376157
NFX1_chr9_33285516_33376157	0/0	t0006	1237	1	1	0	0	0	0	copy fasta	NFX1	chr9	33285516	33376157
NFX1_chr9_33285516_33376157	0/0	t0007	1237	1	0	1	0	0	0	copy fasta	NFX1	chr9	33285516	33376157
NFXL1_chr4_47842240_47919583	0/1	t0001	1144	256	62	23	141	5	24	copy fasta	NFXL1	chr4	47842240	47919583
NFXL1_chr4_47842240_47919583	0/0	t0002	1144	64	3	25	16	7	13	copy fasta	NFXL1	chr4	47842240	47919583
NFXL1_chr4_47842240_47919583	1/0	t0003	1145	34	7	14	3	4	5	copy fasta	NFXL1	chr4	47842240	47919583