JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NFXL1_chr4_47842240_47919583	0/0	t0004	1144	7	7	0	0	0	0	copy fasta	NFXL1	chr4	47842240	47919583
NFXL1_chr4_47842240_47919583	0/0	t0005	1144	4	4	0	0	0	0	copy fasta	NFXL1	chr4	47842240	47919583
NFXL1_chr4_47842240_47919583	0/0	t0006	1145	4	4	0	0	0	0	copy fasta	NFXL1	chr4	47842240	47919583
NFXL1_chr4_47842240_47919583	0/0	t0007	1144	3	0	3	0	0	0	copy fasta	NFXL1	chr4	47842240	47919583
NFXL1_chr4_47842240_47919583	0/0	t0008	1144	2	0	2	0	0	0	copy fasta	NFXL1	chr4	47842240	47919583
NFXL1_chr4_47842240_47919583	0/0	t0009	1144	1	0	1	0	0	0	copy fasta	NFXL1	chr4	47842240	47919583
NFXL1_chr4_47842240_47919583	0/0	t0010	1144	1	1	0	0	0	0	copy fasta	NFXL1	chr4	47842240	47919583
NFXL1_chr4_47842240_47919583	0/0	t0011	1144	1	1	0	0	0	0	copy fasta	NFXL1	chr4	47842240	47919583
NFXL1_chr4_47842240_47919583	0/0	t0012	1144	1	1	0	0	0	0	copy fasta	NFXL1	chr4	47842240	47919583
NFYA_chr6_41067974_41107403	1/1	t0001	5166	205	31	44	86	10	32	copy fasta	NFYA	chr6	41067974	41107403
NFYA_chr6_41067974_41107403	0/0	t0002	5166	25	0	0	25	0	0	copy fasta	NFYA	chr6	41067974	41107403
NFYA_chr6_41067974_41107403	0/0	t0003	5166	18	14	2	0	0	2	copy fasta	NFYA	chr6	41067974	41107403
NFYA_chr6_41067974_41107403	0/0	t0004	5166	16	16	0	0	0	0	copy fasta	NFYA	chr6	41067974	41107403
NFYA_chr6_41067974_41107403	0/0	t0005	5165	6	0	0	6	0	0	copy fasta	NFYA	chr6	41067974	41107403
NFYA_chr6_41067974_41107403	0/0	t0006	5166	6	6	0	0	0	0	copy fasta	NFYA	chr6	41067974	41107403
NFYA_chr6_41067974_41107403	0/0	t0007	5165	5	5	0	0	0	0	copy fasta	NFYA	chr6	41067974	41107403
NFYA_chr6_41067974_41107403	0/0	t0008	5164	5	0	5	0	0	0	copy fasta	NFYA	chr6	41067974	41107403
NFYA_chr6_41067974_41107403	0/0	t0009	5166	3	3	0	0	0	0	copy fasta	NFYA	chr6	41067974	41107403
NFYA_chr6_41067974_41107403	0/0	t0010	5166	2	2	0	0	0	0	copy fasta	NFYA	chr6	41067974	41107403
NFYA_chr6_41067974_41107403	0/0	t0011	5166	2	2	0	0	0	0	copy fasta	NFYA	chr6	41067974	41107403
NFYA_chr6_41067974_41107403	0/0	t0012	5166	2	0	0	2	0	0	copy fasta	NFYA	chr6	41067974	41107403
NFYA_chr6_41067974_41107403	0/0	t0013	5166	2	2	0	0	0	0	copy fasta	NFYA	chr6	41067974	41107403
NFYA_chr6_41067974_41107403	0/0	t0014	5166	2	0	0	2	0	0	copy fasta	NFYA	chr6	41067974	41107403
NFYA_chr6_41067974_41107403	0/0	t0015	5149	2	0	0	1	0	1	copy fasta	NFYA	chr6	41067974	41107403
NFYA_chr6_41067974_41107403	0/0	t0016	5166	1	0	0	1	0	0	copy fasta	NFYA	chr6	41067974	41107403
NFYA_chr6_41067974_41107403	0/0	t0017	5166	1	1	0	0	0	0	copy fasta	NFYA	chr6	41067974	41107403
NFYA_chr6_41067974_41107403	0/0	t0018	5165	1	1	0	0	0	0	copy fasta	NFYA	chr6	41067974	41107403
NFYA_chr6_41067974_41107403	0/0	t0019	5166	1	0	0	0	0	1	copy fasta	NFYA	chr6	41067974	41107403
NFYA_chr6_41067974_41107403	0/0	t0020	5165	1	1	0	0	0	0	copy fasta	NFYA	chr6	41067974	41107403
NFYA_chr6_41067974_41107403	0/0	t0021	5166	1	0	0	0	0	1	copy fasta	NFYA	chr6	41067974	41107403
NFYA_chr6_41067974_41107403	0/0	t0022	5166	1	0	0	1	0	0	copy fasta	NFYA	chr6	41067974	41107403
NFYA_chr6_41067974_41107403	0/0	t0023	5166	1	0	0	0	0	1	copy fasta	NFYA	chr6	41067974	41107403
NFYA_chr6_41067974_41107403	0/0	t0024	5166	1	0	0	1	0	0	copy fasta	NFYA	chr6	41067974	41107403
NFYA_chr6_41067974_41107403	0/0	t0025	5166	1	1	0	0	0	0	copy fasta	NFYA	chr6	41067974	41107403
NFYA_chr6_41067974_41107403	0/0	t0026	5166	1	1	0	0	0	0	copy fasta	NFYA	chr6	41067974	41107403
NFYA_chr6_41067974_41107403	0/0	t0027	5165	1	1	0	0	0	0	copy fasta	NFYA	chr6	41067974	41107403
NFYA_chr6_41067974_41107403	0/0	t0028	5166	1	1	0	0	0	0	copy fasta	NFYA	chr6	41067974	41107403
NFYA_chr6_41067974_41107403	0/0	t0029	5165	1	0	1	0	0	0	copy fasta	NFYA	chr6	41067974	41107403
NFYA_chr6_41067974_41107403	0/0	t0030	5166	1	1	0	0	0	0	copy fasta	NFYA	chr6	41067974	41107403
NFYA_chr6_41067974_41107403	0/0	t0031	5166	1	0	0	0	1	0	copy fasta	NFYA	chr6	41067974	41107403
NFYA_chr6_41067974_41107403	0/0	t0032	5164	1	0	0	0	1	0	copy fasta	NFYA	chr6	41067974	41107403
NFYA_chr6_41067974_41107403	0/0	t0033	5166	1	1	0	0	0	0	copy fasta	NFYA	chr6	41067974	41107403
NFYA_chr6_41067974_41107403	0/0	t0034	5166	1	1	0	0	0	0	copy fasta	NFYA	chr6	41067974	41107403
NFYA_chr6_41067974_41107403	0/0	t0035	5166	1	1	0	0	0	0	copy fasta	NFYA	chr6	41067974	41107403
NFYA_chr6_41067974_41107403	0/0	t0036	5166	1	0	0	0	0	1	copy fasta	NFYA	chr6	41067974	41107403
NFYA_chr6_41067974_41107403	0/0	t0037	5149	1	0	0	0	0	1	copy fasta	NFYA	chr6	41067974	41107403
NFYA_chr6_41067974_41107403	0/0	t0038	5166	1	0	0	1	0	0	copy fasta	NFYA	chr6	41067974	41107403
NFYB_chr12_104112086_104143210	0/0	t0001	2801	175	36	21	104	3	11	copy fasta	NFYB	chr12	104112086	104143210
NFYB_chr12_104112086_104143210	0/0	t0002	2801	97	15	19	51	3	9	copy fasta	NFYB	chr12	104112086	104143210
NFYB_chr12_104112086_104143210	1/1	t0003	2801	91	29	26	14	6	14	copy fasta	NFYB	chr12	104112086	104143210