JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NFYB_chr12_104112086_104143210	0/0	t0004	2801	8	0	4	0	3	1	copy fasta	NFYB	chr12	104112086	104143210
NFYB_chr12_104112086_104143210	0/0	t0005	2801	5	4	1	0	0	0	copy fasta	NFYB	chr12	104112086	104143210
NFYB_chr12_104112086_104143210	0/0	t0006	2802	4	0	0	4	0	0	copy fasta	NFYB	chr12	104112086	104143210
NFYB_chr12_104112086_104143210	0/0	t0007	2801	3	1	0	0	0	2	copy fasta	NFYB	chr12	104112086	104143210
NFYB_chr12_104112086_104143210	0/0	t0008	2801	2	0	1	0	1	0	copy fasta	NFYB	chr12	104112086	104143210
NFYB_chr12_104112086_104143210	0/0	t0009	2801	1	1	0	0	0	0	copy fasta	NFYB	chr12	104112086	104143210
NFYB_chr12_104112086_104143210	0/0	t0010	2801	1	0	0	0	0	1	copy fasta	NFYB	chr12	104112086	104143210
NFYB_chr12_104112086_104143210	0/0	t0011	2801	1	0	1	0	0	0	copy fasta	NFYB	chr12	104112086	104143210
NFYB_chr12_104112086_104143210	0/0	t0012	2801	1	0	1	0	0	0	copy fasta	NFYB	chr12	104112086	104143210
NFYB_chr12_104112086_104143210	0/0	t0013	2801	1	0	0	1	0	0	copy fasta	NFYB	chr12	104112086	104143210
NFYB_chr12_104112086_104143210	0/0	t0014	2801	1	0	0	1	0	0	copy fasta	NFYB	chr12	104112086	104143210
NFYB_chr12_104112086_104143210	0/0	t0015	2801	1	0	0	1	0	0	copy fasta	NFYB	chr12	104112086	104143210
NFYB_chr12_104112086_104143210	0/0	t0016	2801	1	1	0	0	0	0	copy fasta	NFYB	chr12	104112086	104143210
NFYB_chr12_104112086_104143210	0/0	t0017	2827	1	1	0	0	0	0	copy fasta	NFYB	chr12	104112086	104143210
NFYC_chr1_40686704_40776603	1/1	t0001	948	222	73	43	74	10	20	copy fasta	NFYC	chr1	40686704	40776603
NFYC_chr1_40686704_40776603	0/0	t0002	947	96	7	18	53	3	15	copy fasta	NFYC	chr1	40686704	40776603
NFYC_chr1_40686704_40776603	0/0	t0003	948	4	3	1	0	0	0	copy fasta	NFYC	chr1	40686704	40776603
NFYC_chr1_40686704_40776603	0/0	t0004	948	2	2	0	0	0	0	copy fasta	NFYC	chr1	40686704	40776603
NFYC_chr1_40686704_40776603	0/0	t0005	948	2	2	0	0	0	0	copy fasta	NFYC	chr1	40686704	40776603
NFYC_chr1_40686704_40776603	0/0	t0006	947	1	0	0	0	1	0	copy fasta	NFYC	chr1	40686704	40776603
NFYC_chr1_40686704_40776603	0/0	t0007	948	1	1	0	0	0	0	copy fasta	NFYC	chr1	40686704	40776603
NFYC_chr1_40686704_40776603	0/0	t0008	948	1	0	0	0	0	1	copy fasta	NFYC	chr1	40686704	40776603
NFYC_chr1_40686704_40776603	0/0	t0009	948	1	0	0	1	0	0	copy fasta	NFYC	chr1	40686704	40776603
NFYC_chr1_40686704_40776603	0/0	t0010	948	1	0	0	1	0	0	copy fasta	NFYC	chr1	40686704	40776603
NFYC_chr1_40686704_40776603	0/0	t0011	948	1	0	0	1	0	0	copy fasta	NFYC	chr1	40686704	40776603
NGB_chr14_77260483_77276206	1/1	t0001	1323	327	81	57	139	7	41	copy fasta	NGB	chr14	77260483	77276206
NGB_chr14_77260483_77276206	0/0	t0002	1323	15	0	0	15	0	0	copy fasta	NGB	chr14	77260483	77276206
NGB_chr14_77260483_77276206	0/0	t0003	1322	11	0	3	7	1	0	copy fasta	NGB	chr14	77260483	77276206
NGB_chr14_77260483_77276206	0/0	t0004	1322	2	2	0	0	0	0	copy fasta	NGB	chr14	77260483	77276206
NGB_chr14_77260483_77276206	0/0	t0005	1323	1	1	0	0	0	0	copy fasta	NGB	chr14	77260483	77276206
NGB_chr14_77260483_77276206	0/0	t0006	1323	1	0	0	1	0	0	copy fasta	NGB	chr14	77260483	77276206
NGB_chr14_77260483_77276206	0/0	t0007	1322	1	1	0	0	0	0	copy fasta	NGB	chr14	77260483	77276206
NGB_chr14_77260483_77276206	0/0	t0008	1323	1	0	0	0	0	1	copy fasta	NGB	chr14	77260483	77276206
NGB_chr14_77260483_77276206	0/0	t0009	1323	1	0	0	0	0	1	copy fasta	NGB	chr14	77260483	77276206
NGB_chr14_77260483_77276206	0/0	t0010	1323	1	1	0	0	0	0	copy fasta	NGB	chr14	77260483	77276206
NGB_chr14_77260483_77276206	0/0	t0011	1323	1	0	0	0	0	1	copy fasta	NGB	chr14	77260483	77276206
NGB_chr14_77260483_77276206	0/0	t0012	1323	1	1	0	0	0	0	copy fasta	NGB	chr14	77260483	77276206
NGB_chr14_77260483_77276206	0/0	t0013	1340	1	1	0	0	0	0	copy fasta	NGB	chr14	77260483	77276206
NGB_chr14_77260483_77276206	0/0	t0014	1323	1	0	0	1	0	0	copy fasta	NGB	chr14	77260483	77276206
NGB_chr14_77260483_77276206	0/0	t0015	1322	1	0	0	1	0	0	copy fasta	NGB	chr14	77260483	77276206
NGDN_chr14_23464703_23483173	0/1	t0001	161	296	71	61	112	16	35	copy fasta	NGDN	chr14	23464703	23483173
NGDN_chr14_23464703_23483173	1/0	t0002	161	96	21	13	54	2	5	copy fasta	NGDN	chr14	23464703	23483173
NGEF_chr2_232873701_233018256	1/0	t0001	1052	55	14	11	17	2	10	copy fasta	NGEF	chr2	232873701	233018256
NGEF_chr2_232873701_233018256	0/0	t0002	1050	54	17	7	25	2	3	copy fasta	NGEF	chr2	232873701	233018256
NGEF_chr2_232873701_233018256	0/1	t0003	1050	43	8	11	15	3	5	copy fasta	NGEF	chr2	232873701	233018256
NGEF_chr2_232873701_233018256	0/0	t0004	1049	41	1	2	32	2	4	copy fasta	NGEF	chr2	232873701	233018256
NGEF_chr2_232873701_233018256	0/0	t0005	1049	37	4	13	14	2	4	copy fasta	NGEF	chr2	232873701	233018256
NGEF_chr2_232873701_233018256	0/0	t0006	1054	23	4	4	12	0	3	copy fasta	NGEF	chr2	232873701	233018256
NGEF_chr2_232873701_233018256	0/0	t0007	1053	18	2	6	4	2	4	copy fasta	NGEF	chr2	232873701	233018256
NGEF_chr2_232873701_233018256	0/0	t0008	1055	18	4	4	7	0	3	copy fasta	NGEF	chr2	232873701	233018256