Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARL5B_chr10_18654431_18686639	0/0	t0025	6631	2	2	0	0	0	0	copy fasta	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	t0026	6630	2	2	0	0	0	0	copy fasta	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	t0027	6631	2	0	0	0	0	2	copy fasta	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	t0028	6631	1	0	0	1	0	0	copy fasta	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	t0029	6630	1	0	0	0	0	1	copy fasta	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	t0030	6630	1	1	0	0	0	0	copy fasta	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	t0031	6630	1	0	0	1	0	0	copy fasta	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	t0032	6630	1	0	0	0	1	0	copy fasta	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	t0033	6630	1	1	0	0	0	0	copy fasta	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	t0034	6630	1	0	0	0	1	0	copy fasta	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	t0035	6630	1	0	1	0	0	0	copy fasta	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	t0036	6630	1	1	0	0	0	0	copy fasta	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	t0037	6630	1	0	0	1	0	0	copy fasta	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	t0038	6630	1	0	1	0	0	0	copy fasta	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	t0039	6631	1	0	0	0	0	1	copy fasta	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	t0040	6631	1	1	0	0	0	0	copy fasta	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	t0041	6631	1	1	0	0	0	0	copy fasta	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	t0042	6630	1	1	0	0	0	0	copy fasta	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	t0043	6631	1	1	0	0	0	0	copy fasta	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	t0044	6631	1	0	0	1	0	0	copy fasta	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	t0045	6631	1	0	0	1	0	0	copy fasta	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	t0046	6631	1	0	0	1	0	0	copy fasta	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	t0047	6631	1	0	0	1	0	0	copy fasta	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	t0048	6631	1	1	0	0	0	0	copy fasta	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	t0049	6631	1	1	0	0	0	0	copy fasta	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	t0050	6631	1	0	0	1	0	0	copy fasta	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	t0051	6631	1	0	0	1	0	0	copy fasta	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	t0052	6631	1	0	0	0	1	0	copy fasta	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	t0053	6631	1	0	0	1	0	0	copy fasta	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	t0054	6631	1	0	1	0	0	0	copy fasta	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	t0055	6631	1	1	0	0	0	0	copy fasta	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	t0056	6631	1	0	1	0	0	0	copy fasta	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	t0057	6631	1	1	0	0	0	0	copy fasta	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	t0058	6631	1	0	0	1	0	0	copy fasta	ARL5B	chr10	18654431	18686639
ARL5C_chr17_39151894_39171161	1/1	t0001	402	274	30	65	128	13	36	copy fasta	ARL5C	chr17	39151894	39171161
ARL5C_chr17_39151894_39171161	0/0	t0002	402	128	59	11	49	5	4	copy fasta	ARL5C	chr17	39151894	39171161
ARL5C_chr17_39151894_39171161	0/0	t0003	402	4	4	0	0	0	0	copy fasta	ARL5C	chr17	39151894	39171161
ARL5C_chr17_39151894_39171161	0/0	t0004	402	3	3	0	0	0	0	copy fasta	ARL5C	chr17	39151894	39171161
ARL5C_chr17_39151894_39171161	0/0	t0005	402	1	0	0	1	0	0	copy fasta	ARL5C	chr17	39151894	39171161
ARL6IP1_chr16_18786669_18806549	1/0	t0001	1667	264	65	40	116	12	30	copy fasta	ARL6IP1	chr16	18786669	18806549
ARL6IP1_chr16_18786669_18806549	0/0	t0002	1667	36	5	10	16	1	4	copy fasta	ARL6IP1	chr16	18786669	18806549
ARL6IP1_chr16_18786669_18806549	0/1	t0003	1667	23	15	5	0	1	1	copy fasta	ARL6IP1	chr16	18786669	18806549
ARL6IP1_chr16_18786669_18806549	0/0	t0004	1667	10	9	1	0	0	0	copy fasta	ARL6IP1	chr16	18786669	18806549
ARL6IP1_chr16_18786669_18806549	0/0	t0005	1667	2	0	0	2	0	0	copy fasta	ARL6IP1	chr16	18786669	18806549
ARL6IP1_chr16_18786669_18806549	0/0	t0006	1667	2	0	1	0	0	1	copy fasta	ARL6IP1	chr16	18786669	18806549
ARL6IP1_chr16_18786669_18806549	0/0	t0007	1667	1	1	0	0	0	0	copy fasta	ARL6IP1	chr16	18786669	18806549
ARL6IP1_chr16_18786669_18806549	0/0	t0008	1667	1	0	0	1	0	0	copy fasta	ARL6IP1	chr16	18786669	18806549
ARL6IP1_chr16_18786669_18806549	0/0	t0009	1667	1	0	1	0	0	0	copy fasta	ARL6IP1	chr16	18786669	18806549
ARL6IP1_chr16_18786669_18806549	0/0	t0010	1667	1	1	0	0	0	0	copy fasta	ARL6IP1	chr16	18786669	18806549
ARL6IP1_chr16_18786669_18806549	0/0	t0011	1667	1	0	0	1	0	0	copy fasta	ARL6IP1	chr16	18786669	18806549