JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NGEF_chr2_232873701_233018256	0/0	t0009	1051	12	2	0	9	0	1	copy fasta	NGEF	chr2	232873701	233018256
NGEF_chr2_232873701_233018256	0/0	t0010	1050	9	9	0	0	0	0	copy fasta	NGEF	chr2	232873701	233018256
NGEF_chr2_232873701_233018256	0/0	t0011	1050	8	7	1	0	0	0	copy fasta	NGEF	chr2	232873701	233018256
NGEF_chr2_232873701_233018256	0/0	t0012	1050	6	0	1	2	1	2	copy fasta	NGEF	chr2	232873701	233018256
NGEF_chr2_232873701_233018256	0/0	t0013	1050	5	0	2	3	0	0	copy fasta	NGEF	chr2	232873701	233018256
NGEF_chr2_232873701_233018256	0/0	t0014	1051	4	1	1	2	0	0	copy fasta	NGEF	chr2	232873701	233018256
NGEF_chr2_232873701_233018256	0/0	t0015	1054	4	4	0	0	0	0	copy fasta	NGEF	chr2	232873701	233018256
NGEF_chr2_232873701_233018256	0/0	t0016	1049	3	3	0	0	0	0	copy fasta	NGEF	chr2	232873701	233018256
NGEF_chr2_232873701_233018256	0/0	t0017	1049	2	0	0	2	0	0	copy fasta	NGEF	chr2	232873701	233018256
NGEF_chr2_232873701_233018256	0/0	t0018	1052	2	1	0	1	0	0	copy fasta	NGEF	chr2	232873701	233018256
NGEF_chr2_232873701_233018256	0/0	t0019	1049	2	2	0	0	0	0	copy fasta	NGEF	chr2	232873701	233018256
NGEF_chr2_232873701_233018256	0/0	t0020	1053	1	1	0	0	0	0	copy fasta	NGEF	chr2	232873701	233018256
NGEF_chr2_232873701_233018256	0/0	t0021	1050	1	1	0	0	0	0	copy fasta	NGEF	chr2	232873701	233018256
NGEF_chr2_232873701_233018256	0/0	t0022	1051	1	1	0	0	0	0	copy fasta	NGEF	chr2	232873701	233018256
NGEF_chr2_232873701_233018256	0/0	t0023	1051	1	1	0	0	0	0	copy fasta	NGEF	chr2	232873701	233018256
NGEF_chr2_232873701_233018256	0/0	t0024	1052	1	1	0	0	0	0	copy fasta	NGEF	chr2	232873701	233018256
NGEF_chr2_232873701_233018256	0/0	t0025	1054	1	1	0	0	0	0	copy fasta	NGEF	chr2	232873701	233018256
NGEF_chr2_232873701_233018256	0/0	t0026	1052	1	0	0	1	0	0	copy fasta	NGEF	chr2	232873701	233018256
NGEF_chr2_232873701_233018256	0/0	t0027	1049	1	0	0	0	0	1	copy fasta	NGEF	chr2	232873701	233018256
NGEF_chr2_232873701_233018256	0/0	t0028	1051	1	1	0	0	0	0	copy fasta	NGEF	chr2	232873701	233018256
NGEF_chr2_232873701_233018256	0/0	t0029	1050	1	1	0	0	0	0	copy fasta	NGEF	chr2	232873701	233018256
NGEF_chr2_232873701_233018256	0/0	t0030	1051	1	1	0	0	0	0	copy fasta	NGEF	chr2	232873701	233018256
NGEF_chr2_232873701_233018256	0/0	t0031	1052	1	1	0	0	0	0	copy fasta	NGEF	chr2	232873701	233018256
NGEF_chr2_232873701_233018256	0/0	t0032	1052	1	0	0	1	0	0	copy fasta	NGEF	chr2	232873701	233018256
NGEF_chr2_232873701_233018256	0/0	t0033	1054	1	0	0	1	0	0	copy fasta	NGEF	chr2	232873701	233018256
NGEF_chr2_232873701_233018256	0/0	t0034	1162	1	1	0	0	0	0	copy fasta	NGEF	chr2	232873701	233018256
NGEF_chr2_232873701_233018256	0/0	t0035	1050	1	0	1	0	0	0	copy fasta	NGEF	chr2	232873701	233018256
NGFR_chr17_49490293_49520008	1/0	t0001	2125	95	16	28	35	8	7	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	t0002	2125	55	0	23	15	3	14	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/1	t0003	2125	40	4	3	26	4	2	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	t0004	2125	32	3	8	11	3	7	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	t0005	2125	23	22	1	0	0	0	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	t0006	2115	21	0	1	20	0	0	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	t0007	2125	18	0	0	14	0	4	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	t0008	2115	14	0	5	9	0	0	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	t0009	2125	14	7	0	6	0	1	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	t0010	2115	12	0	0	12	0	0	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	t0011	2125	7	7	0	0	0	0	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	t0012	2125	6	6	0	0	0	0	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	t0013	2125	6	3	3	0	0	0	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	t0014	2115	4	0	0	4	0	0	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	t0015	2115	4	0	0	4	0	0	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	t0016	2125	4	4	0	0	0	0	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	t0017	2125	4	3	0	1	0	0	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	t0018	2125	4	0	4	0	0	0	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	t0019	2125	4	0	1	0	0	3	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	t0020	2115	3	0	0	3	0	0	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	t0021	2125	3	3	0	0	0	0	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	t0022	2125	3	0	1	2	0	0	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	t0023	2125	3	0	0	2	0	1	copy fasta	NGFR	chr17	49490293	49520008