JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NGFR_chr17_49490293_49520008	0/0	t0024	2125	3	3	0	0	0	0	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	t0025	2125	3	0	0	3	0	0	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	t0026	2125	2	0	0	1	0	1	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	t0027	2125	2	0	0	0	0	2	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	t0028	2125	2	0	0	0	0	2	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	t0029	2125	2	1	1	0	0	0	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	t0030	2125	2	0	0	2	0	0	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	t0031	2125	2	2	0	0	0	0	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	t0032	2125	2	1	1	0	0	0	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	t0033	2125	2	2	0	0	0	0	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	t0034	2125	2	0	0	2	0	0	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	t0035	2115	1	0	0	1	0	0	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	t0036	2115	1	0	0	1	0	0	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	t0037	2115	1	0	0	1	0	0	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	t0038	2115	1	0	0	1	0	0	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	t0039	2125	1	0	1	0	0	0	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	t0040	2125	1	0	1	0	0	0	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	t0041	2125	1	1	0	0	0	0	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	t0042	2125	1	0	0	1	0	0	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	t0043	2125	1	1	0	0	0	0	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	t0044	2125	1	0	0	0	0	1	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	t0045	2125	1	0	0	1	0	0	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	t0046	2125	1	0	1	0	0	0	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	t0047	2125	1	1	0	0	0	0	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	t0048	2125	1	1	0	0	0	0	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	t0049	2125	1	1	0	0	0	0	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	t0050	2125	1	1	0	0	0	0	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	t0051	2125	1	1	0	0	0	0	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	t0052	2125	1	0	0	0	0	1	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	t0053	2125	1	0	0	1	0	0	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	t0054	2125	1	0	1	0	0	0	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	t0055	2125	1	0	0	1	0	0	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	t0056	2125	1	1	0	0	0	0	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	t0057	2125	1	1	0	0	0	0	copy fasta	NGFR	chr17	49490293	49520008
NGF_chr1_115280917_115343249	1/1	t0001	336	417	96	82	184	6	47	copy fasta	NGF	chr1	115280917	115343249
NGF_chr1_115280917_115343249	0/0	t0002	336	1	0	0	0	0	1	copy fasta	NGF	chr1	115280917	115343249
NGLY1_chr3_25713944_25788443	1/1	t0001	570	247	80	58	74	4	29	copy fasta	NGLY1	chr3	25713944	25788443
NGLY1_chr3_25713944_25788443	0/0	t0002	570	8	8	0	0	0	0	copy fasta	NGLY1	chr3	25713944	25788443
NGLY1_chr3_25713944_25788443	0/0	t0003	570	3	3	0	0	0	0	copy fasta	NGLY1	chr3	25713944	25788443
NGLY1_chr3_25713944_25788443	0/0	t0004	565	3	2	0	0	0	1	copy fasta	NGLY1	chr3	25713944	25788443
NGLY1_chr3_25713944_25788443	0/0	t0005	570	1	1	0	0	0	0	copy fasta	NGLY1	chr3	25713944	25788443
NGLY1_chr3_25713944_25788443	0/0	t0006	570	1	0	1	0	0	0	copy fasta	NGLY1	chr3	25713944	25788443
NGLY1_chr3_25713944_25788443	0/0	t0007	570	1	0	1	0	0	0	copy fasta	NGLY1	chr3	25713944	25788443
NGRN_chr15_90260672_90277211	1/1	t0001	465	439	91	78	212	14	42	copy fasta	NGRN	chr15	90260672	90277211
NGRN_chr15_90260672_90277211	0/0	t0002	465	12	0	6	0	4	2	copy fasta	NGRN	chr15	90260672	90277211
NGRN_chr15_90260672_90277211	0/0	t0003	465	3	3	0	0	0	0	copy fasta	NGRN	chr15	90260672	90277211
NGRN_chr15_90260672_90277211	0/0	t0004	465	2	0	2	0	0	0	copy fasta	NGRN	chr15	90260672	90277211
NHEJ1_chr2_219064357_219165815	0/0	t0001	7121	126	15	23	72	4	12	copy fasta	NHEJ1	chr2	219064357	219165815
NHEJ1_chr2_219064357_219165815	0/0	t0002	7121	65	17	8	29	2	9	copy fasta	NHEJ1	chr2	219064357	219165815
NHEJ1_chr2_219064357_219165815	0/0	t0003	7121	42	6	3	28	1	4	copy fasta	NHEJ1	chr2	219064357	219165815