JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NHEJ1_chr2_219064357_219165815	0/0	t0004	7121	12	0	0	12	0	0	copy fasta	NHEJ1	chr2	219064357	219165815
NHEJ1_chr2_219064357_219165815	0/1	t0005	7121	11	0	8	0	1	1	copy fasta	NHEJ1	chr2	219064357	219165815
NHEJ1_chr2_219064357_219165815	0/0	t0006	7121	11	11	0	0	0	0	copy fasta	NHEJ1	chr2	219064357	219165815
NHEJ1_chr2_219064357_219165815	0/0	t0007	7121	7	0	0	7	0	0	copy fasta	NHEJ1	chr2	219064357	219165815
NHEJ1_chr2_219064357_219165815	0/0	t0008	7193	6	6	0	0	0	0	copy fasta	NHEJ1	chr2	219064357	219165815
NHEJ1_chr2_219064357_219165815	0/0	t0009	7121	5	3	2	0	0	0	copy fasta	NHEJ1	chr2	219064357	219165815
NHEJ1_chr2_219064357_219165815	0/0	t0010	7121	4	1	0	3	0	0	copy fasta	NHEJ1	chr2	219064357	219165815
NHEJ1_chr2_219064357_219165815	0/0	t0011	7121	4	4	0	0	0	0	copy fasta	NHEJ1	chr2	219064357	219165815
NHEJ1_chr2_219064357_219165815	0/0	t0012	7122	4	4	0	0	0	0	copy fasta	NHEJ1	chr2	219064357	219165815
NHEJ1_chr2_219064357_219165815	0/0	t0013	7121	3	3	0	0	0	0	copy fasta	NHEJ1	chr2	219064357	219165815
NHEJ1_chr2_219064357_219165815	0/0	t0014	7121	3	0	0	3	0	0	copy fasta	NHEJ1	chr2	219064357	219165815
NHEJ1_chr2_219064357_219165815	0/0	t0015	7121	3	0	0	3	0	0	copy fasta	NHEJ1	chr2	219064357	219165815
NHEJ1_chr2_219064357_219165815	0/0	t0016	7120	3	3	0	0	0	0	copy fasta	NHEJ1	chr2	219064357	219165815
NHEJ1_chr2_219064357_219165815	0/0	t0017	7121	2	0	0	2	0	0	copy fasta	NHEJ1	chr2	219064357	219165815
NHEJ1_chr2_219064357_219165815	0/0	t0018	7120	2	0	2	0	0	0	copy fasta	NHEJ1	chr2	219064357	219165815
NHEJ1_chr2_219064357_219165815	0/0	t0019	7121	2	0	0	0	0	2	copy fasta	NHEJ1	chr2	219064357	219165815
NHEJ1_chr2_219064357_219165815	0/0	t0020	7121	2	0	2	0	0	0	copy fasta	NHEJ1	chr2	219064357	219165815
NHEJ1_chr2_219064357_219165815	0/0	t0021	7121	2	0	1	1	0	0	copy fasta	NHEJ1	chr2	219064357	219165815
NHEJ1_chr2_219064357_219165815	1/0	t0022	7121	2	0	0	0	0	1	copy fasta	NHEJ1	chr2	219064357	219165815
NHEJ1_chr2_219064357_219165815	0/0	t0023	7121	2	2	0	0	0	0	copy fasta	NHEJ1	chr2	219064357	219165815
NHEJ1_chr2_219064357_219165815	0/0	t0024	7121	2	2	0	0	0	0	copy fasta	NHEJ1	chr2	219064357	219165815
NHEJ1_chr2_219064357_219165815	0/0	t0025	7121	1	0	0	1	0	0	copy fasta	NHEJ1	chr2	219064357	219165815
NHEJ1_chr2_219064357_219165815	0/0	t0026	7120	1	0	1	0	0	0	copy fasta	NHEJ1	chr2	219064357	219165815
NHEJ1_chr2_219064357_219165815	0/0	t0027	7121	1	0	0	1	0	0	copy fasta	NHEJ1	chr2	219064357	219165815
NHEJ1_chr2_219064357_219165815	0/0	t0028	7121	1	0	0	1	0	0	copy fasta	NHEJ1	chr2	219064357	219165815
NHEJ1_chr2_219064357_219165815	0/0	t0029	7121	1	0	0	0	0	1	copy fasta	NHEJ1	chr2	219064357	219165815
NHEJ1_chr2_219064357_219165815	0/0	t0030	7120	1	0	0	1	0	0	copy fasta	NHEJ1	chr2	219064357	219165815
NHEJ1_chr2_219064357_219165815	0/0	t0031	7121	1	0	0	0	0	1	copy fasta	NHEJ1	chr2	219064357	219165815
NHEJ1_chr2_219064357_219165815	0/0	t0032	7121	1	0	0	0	0	1	copy fasta	NHEJ1	chr2	219064357	219165815
NHEJ1_chr2_219064357_219165815	0/0	t0033	7121	1	0	1	0	0	0	copy fasta	NHEJ1	chr2	219064357	219165815
NHEJ1_chr2_219064357_219165815	0/0	t0034	7122	1	1	0	0	0	0	copy fasta	NHEJ1	chr2	219064357	219165815
NHEJ1_chr2_219064357_219165815	0/0	t0035	7120	1	0	0	1	0	0	copy fasta	NHEJ1	chr2	219064357	219165815
NHEJ1_chr2_219064357_219165815	0/0	t0036	7121	1	0	0	1	0	0	copy fasta	NHEJ1	chr2	219064357	219165815
NHEJ1_chr2_219064357_219165815	0/0	t0037	7121	1	0	0	0	0	1	copy fasta	NHEJ1	chr2	219064357	219165815
NHEJ1_chr2_219064357_219165815	0/0	t0038	7121	1	0	0	1	0	0	copy fasta	NHEJ1	chr2	219064357	219165815
NHEJ1_chr2_219064357_219165815	0/0	t0039	7121	1	1	0	0	0	0	copy fasta	NHEJ1	chr2	219064357	219165815
NHEJ1_chr2_219064357_219165815	0/0	t0040	7121	1	0	0	1	0	0	copy fasta	NHEJ1	chr2	219064357	219165815
NHEJ1_chr2_219064357_219165815	0/0	t0041	7121	1	0	0	0	0	1	copy fasta	NHEJ1	chr2	219064357	219165815
NHEJ1_chr2_219064357_219165815	0/0	t0042	7121	1	0	1	0	0	0	copy fasta	NHEJ1	chr2	219064357	219165815
NHEJ1_chr2_219064357_219165815	0/0	t0043	7121	1	0	0	1	0	0	copy fasta	NHEJ1	chr2	219064357	219165815
NHEJ1_chr2_219064357_219165815	0/0	t0044	7122	1	1	0	0	0	0	copy fasta	NHEJ1	chr2	219064357	219165815
NHEJ1_chr2_219064357_219165815	0/0	t0045	7121	1	0	0	1	0	0	copy fasta	NHEJ1	chr2	219064357	219165815
NHEJ1_chr2_219064357_219165815	0/0	t0046	7122	1	1	0	0	0	0	copy fasta	NHEJ1	chr2	219064357	219165815
NHEJ1_chr2_219064357_219165815	0/0	t0047	7121	1	1	0	0	0	0	copy fasta	NHEJ1	chr2	219064357	219165815
NHEJ1_chr2_219064357_219165815	0/0	t0048	7121	1	1	0	0	0	0	copy fasta	NHEJ1	chr2	219064357	219165815
NHEJ1_chr2_219064357_219165815	0/0	t0049	7122	1	1	0	0	0	0	copy fasta	NHEJ1	chr2	219064357	219165815
NHERF1_chr17_74743628_74774353	1/0	t0001	917	164	37	22	67	11	26	copy fasta	NHERF1	chr17	74743628	74774353
NHERF1_chr17_74743628_74774353	0/1	t0002	917	144	34	43	52	4	10	copy fasta	NHERF1	chr17	74743628	74774353
NHERF1_chr17_74743628_74774353	0/0	t0003	917	21	0	0	19	0	2	copy fasta	NHERF1	chr17	74743628	74774353
NHERF1_chr17_74743628_74774353	0/0	t0004	917	21	8	6	1	0	6	copy fasta	NHERF1	chr17	74743628	74774353