JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NHERF1_chr17_74743628_74774353	0/0	t0005	917	6	5	1	0	0	0	copy fasta	NHERF1	chr17	74743628	74774353
NHERF1_chr17_74743628_74774353	0/0	t0006	917	3	0	1	0	2	0	copy fasta	NHERF1	chr17	74743628	74774353
NHERF1_chr17_74743628_74774353	0/0	t0007	917	3	2	1	0	0	0	copy fasta	NHERF1	chr17	74743628	74774353
NHERF1_chr17_74743628_74774353	0/0	t0008	917	2	0	1	0	0	1	copy fasta	NHERF1	chr17	74743628	74774353
NHERF1_chr17_74743628_74774353	0/0	t0009	917	2	0	1	0	1	0	copy fasta	NHERF1	chr17	74743628	74774353
NHERF1_chr17_74743628_74774353	0/0	t0010	917	1	1	0	0	0	0	copy fasta	NHERF1	chr17	74743628	74774353
NHERF1_chr17_74743628_74774353	0/0	t0011	917	1	0	0	1	0	0	copy fasta	NHERF1	chr17	74743628	74774353
NHERF1_chr17_74743628_74774353	0/0	t0012	917	1	1	0	0	0	0	copy fasta	NHERF1	chr17	74743628	74774353
NHERF1_chr17_74743628_74774353	0/0	t0013	917	1	0	0	0	0	1	copy fasta	NHERF1	chr17	74743628	74774353
NHERF2_chr16_2021902_2044026	0/0	t0001	1135	142	3	21	88	6	24	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	1/0	t0002	1147	71	23	11	27	1	8	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	t0003	1148	36	6	10	18	0	2	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	t0004	1146	21	11	3	7	0	0	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	t0005	1145	19	18	1	0	0	0	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	t0006	1146	14	7	4	0	1	2	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	t0007	1146	11	11	0	0	0	0	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	t0008	1136	10	1	0	4	0	5	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	t0009	1135	10	0	5	0	4	1	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/1	t0010	1146	10	1	3	0	3	2	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	t0011	1146	8	7	1	0	0	0	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	t0012	1147	6	0	0	6	0	0	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	t0013	1135	5	0	4	0	1	0	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	t0014	1146	5	0	3	0	1	1	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	t0015	1146	4	1	2	1	0	0	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	t0016	1147	4	3	1	0	0	0	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	t0017	1148	3	0	0	3	0	0	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	t0018	1147	3	1	2	0	0	0	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	t0019	1135	3	0	0	3	0	0	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	t0020	1137	3	0	0	3	0	0	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	t0021	1135	3	0	0	3	0	0	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	t0022	1136	2	0	2	0	0	0	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	t0023	1147	2	0	0	2	0	0	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	t0024	1158	2	1	1	0	0	0	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	t0025	1147	2	1	1	0	0	0	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	t0026	1136	2	0	2	0	0	0	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	t0027	1145	1	1	0	0	0	0	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	t0028	1147	1	0	0	1	0	0	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	t0029	1161	1	0	1	0	0	0	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	t0030	1137	1	0	0	1	0	0	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	t0031	1148	1	0	1	0	0	0	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	t0032	1159	1	1	0	0	0	0	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	t0033	1147	1	0	1	0	0	0	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	t0034	1147	1	0	0	1	0	0	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	t0035	1135	1	0	0	1	0	0	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	t0036	1135	1	0	1	0	0	0	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	t0037	1146	1	1	0	0	0	0	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	t0038	1146	1	1	0	0	0	0	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	t0039	1134	1	0	0	1	0	0	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	t0040	1133	1	0	0	0	0	1	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	t0041	1145	1	1	0	0	0	0	copy fasta	NHERF2	chr16	2021902	2044026