JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NHERF2_chr16_2021902_2044026	0/0	t0042	1136	1	0	0	1	0	0	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	t0043	1135	1	0	0	1	0	0	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	t0044	1149	1	0	0	1	0	0	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	t0045	1135	1	0	0	1	0	0	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	t0046	1148	1	0	1	0	0	0	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	t0047	1146	1	0	0	0	1	0	copy fasta	NHERF2	chr16	2021902	2044026
NHERF4_chr11_119180475_119195213	1/1	t0001	742	410	91	77	180	16	44	copy fasta	NHERF4	chr11	119180475	119195213
NHERF4_chr11_119180475_119195213	0/0	t0002	742	4	4	0	0	0	0	copy fasta	NHERF4	chr11	119180475	119195213
NHERF4_chr11_119180475_119195213	0/0	t0003	742	2	2	0	0	0	0	copy fasta	NHERF4	chr11	119180475	119195213
NHERF4_chr11_119180475_119195213	0/0	t0004	742	2	0	0	0	0	2	copy fasta	NHERF4	chr11	119180475	119195213
NHERF4_chr11_119180475_119195213	0/0	t0005	742	1	1	0	0	0	0	copy fasta	NHERF4	chr11	119180475	119195213
NHERF4_chr11_119180475_119195213	0/0	t0006	742	1	0	1	0	0	0	copy fasta	NHERF4	chr11	119180475	119195213
NHERF4_chr11_119180475_119195213	0/0	t0007	742	1	0	0	1	0	0	copy fasta	NHERF4	chr11	119180475	119195213
NHERF4_chr11_119180475_119195213	0/0	t0008	742	1	0	0	1	0	0	copy fasta	NHERF4	chr11	119180475	119195213
NHLH1_chr1_160362071_160377846	1/1	t0001	2156	138	12	27	80	6	11	copy fasta	NHLH1	chr1	160362071	160377846
NHLH1_chr1_160362071_160377846	0/0	t0002	2156	109	16	18	56	1	18	copy fasta	NHLH1	chr1	160362071	160377846
NHLH1_chr1_160362071_160377846	0/0	t0003	2160	85	3	27	37	6	12	copy fasta	NHLH1	chr1	160362071	160377846
NHLH1_chr1_160362071_160377846	0/0	t0004	2161	31	10	1	19	0	1	copy fasta	NHLH1	chr1	160362071	160377846
NHLH1_chr1_160362071_160377846	0/0	t0005	2161	15	15	0	0	0	0	copy fasta	NHLH1	chr1	160362071	160377846
NHLH1_chr1_160362071_160377846	0/0	t0006	2156	13	0	10	3	0	0	copy fasta	NHLH1	chr1	160362071	160377846
NHLH1_chr1_160362071_160377846	0/0	t0007	2154	12	0	0	12	0	0	copy fasta	NHLH1	chr1	160362071	160377846
NHLH1_chr1_160362071_160377846	0/0	t0008	2160	11	11	0	0	0	0	copy fasta	NHLH1	chr1	160362071	160377846
NHLH1_chr1_160362071_160377846	0/0	t0009	2160	9	9	0	0	0	0	copy fasta	NHLH1	chr1	160362071	160377846
NHLH1_chr1_160362071_160377846	0/0	t0010	2160	5	5	0	0	0	0	copy fasta	NHLH1	chr1	160362071	160377846
NHLH1_chr1_160362071_160377846	0/0	t0011	2160	4	4	0	0	0	0	copy fasta	NHLH1	chr1	160362071	160377846
NHLH1_chr1_160362071_160377846	0/0	t0012	2156	3	3	0	0	0	0	copy fasta	NHLH1	chr1	160362071	160377846
NHLH1_chr1_160362071_160377846	0/0	t0013	2160	2	0	0	0	0	2	copy fasta	NHLH1	chr1	160362071	160377846
NHLH1_chr1_160362071_160377846	0/0	t0014	2160	2	2	0	0	0	0	copy fasta	NHLH1	chr1	160362071	160377846
NHLH1_chr1_160362071_160377846	0/0	t0015	2156	2	0	0	0	0	2	copy fasta	NHLH1	chr1	160362071	160377846
NHLH1_chr1_160362071_160377846	0/0	t0016	2156	2	0	0	2	0	0	copy fasta	NHLH1	chr1	160362071	160377846
NHLH1_chr1_160362071_160377846	0/0	t0017	2156	1	0	0	1	0	0	copy fasta	NHLH1	chr1	160362071	160377846
NHLH1_chr1_160362071_160377846	0/0	t0018	2156	1	0	0	1	0	0	copy fasta	NHLH1	chr1	160362071	160377846
NHLH1_chr1_160362071_160377846	0/0	t0019	2160	1	0	0	0	1	0	copy fasta	NHLH1	chr1	160362071	160377846
NHLH1_chr1_160362071_160377846	0/0	t0020	2161	1	1	0	0	0	0	copy fasta	NHLH1	chr1	160362071	160377846
NHLH1_chr1_160362071_160377846	0/0	t0021	2160	1	1	0	0	0	0	copy fasta	NHLH1	chr1	160362071	160377846
NHLH1_chr1_160362071_160377846	0/0	t0022	2156	1	0	0	1	0	0	copy fasta	NHLH1	chr1	160362071	160377846
NHLH1_chr1_160362071_160377846	0/0	t0023	2156	1	0	0	1	0	0	copy fasta	NHLH1	chr1	160362071	160377846
NHLH1_chr1_160362071_160377846	0/0	t0024	2160	1	1	0	0	0	0	copy fasta	NHLH1	chr1	160362071	160377846
NHLH1_chr1_160362071_160377846	0/0	t0025	2161	1	0	0	1	0	0	copy fasta	NHLH1	chr1	160362071	160377846
NHLH1_chr1_160362071_160377846	0/0	t0026	2160	1	0	1	0	0	0	copy fasta	NHLH1	chr1	160362071	160377846
NHLH1_chr1_160362071_160377846	0/0	t0027	2156	1	0	0	1	0	0	copy fasta	NHLH1	chr1	160362071	160377846
NHLH1_chr1_160362071_160377846	0/0	t0028	2160	1	1	0	0	0	0	copy fasta	NHLH1	chr1	160362071	160377846
NHLH1_chr1_160362071_160377846	0/0	t0029	2160	1	1	0	0	0	0	copy fasta	NHLH1	chr1	160362071	160377846
NHLH1_chr1_160362071_160377846	0/0	t0030	2161	1	1	0	0	0	0	copy fasta	NHLH1	chr1	160362071	160377846
NHLH1_chr1_160362071_160377846	0/0	t0031	2161	1	0	0	1	0	0	copy fasta	NHLH1	chr1	160362071	160377846
NHLH2_chr1_115831377_115846126	0/0	t0001	2105	137	3	24	74	10	26	copy fasta	NHLH2	chr1	115831377	115846126
NHLH2_chr1_115831377_115846126	0/0	t0002	2105	133	10	25	80	5	13	copy fasta	NHLH2	chr1	115831377	115846126
NHLH2_chr1_115831377_115846126	1/0	t0003	2105	83	60	3	19	0	0	copy fasta	NHLH2	chr1	115831377	115846126
NHLH2_chr1_115831377_115846126	0/0	t0004	2105	32	3	16	10	1	2	copy fasta	NHLH2	chr1	115831377	115846126
NHLH2_chr1_115831377_115846126	0/1	t0005	2105	31	4	4	17	0	5	copy fasta	NHLH2	chr1	115831377	115846126