JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NHLRC3_chr13_39033456_39055109	1/0	t0004	2368	42	2	23	5	3	8	copy fasta	NHLRC3	chr13	39033456	39055109
NHLRC3_chr13_39033456_39055109	0/0	t0005	2368	9	9	0	0	0	0	copy fasta	NHLRC3	chr13	39033456	39055109
NHLRC3_chr13_39033456_39055109	0/0	t0006	2369	3	0	0	3	0	0	copy fasta	NHLRC3	chr13	39033456	39055109
NHLRC3_chr13_39033456_39055109	0/0	t0007	2369	2	2	0	0	0	0	copy fasta	NHLRC3	chr13	39033456	39055109
NHLRC3_chr13_39033456_39055109	0/0	t0008	2369	1	0	1	0	0	0	copy fasta	NHLRC3	chr13	39033456	39055109
NHLRC3_chr13_39033456_39055109	0/0	t0009	2369	1	1	0	0	0	0	copy fasta	NHLRC3	chr13	39033456	39055109
NHLRC3_chr13_39033456_39055109	0/0	t0010	2368	1	0	0	0	0	1	copy fasta	NHLRC3	chr13	39033456	39055109
NHLRC3_chr13_39033456_39055109	0/0	t0011	2368	1	0	1	0	0	0	copy fasta	NHLRC3	chr13	39033456	39055109
NHLRC3_chr13_39033456_39055109	0/0	t0012	2369	1	1	0	0	0	0	copy fasta	NHLRC3	chr13	39033456	39055109
NHLRC3_chr13_39033456_39055109	0/0	t0013	2368	1	0	0	1	0	0	copy fasta	NHLRC3	chr13	39033456	39055109
NHLRC3_chr13_39033456_39055109	0/0	t0014	2368	1	1	0	0	0	0	copy fasta	NHLRC3	chr13	39033456	39055109
NHLRC3_chr13_39033456_39055109	0/0	t0015	2368	1	1	0	0	0	0	copy fasta	NHLRC3	chr13	39033456	39055109
NHLRC3_chr13_39033456_39055109	0/1	t0016	2368	1	0	0	0	0	0	copy fasta	NHLRC3	chr13	39033456	39055109
NHLRC3_chr13_39033456_39055109	0/0	t0017	2369	1	0	1	0	0	0	copy fasta	NHLRC3	chr13	39033456	39055109
NHLRC3_chr13_39033456_39055109	0/0	t0018	2369	1	0	0	1	0	0	copy fasta	NHLRC3	chr13	39033456	39055109
NHLRC4_chr16_562005_574495	1/1	t0001	1725	402	82	76	177	17	48	copy fasta	NHLRC4	chr16	562005	574495
NHLRC4_chr16_562005_574495	0/0	t0002	1725	5	5	0	0	0	0	copy fasta	NHLRC4	chr16	562005	574495
NHLRC4_chr16_562005_574495	0/0	t0003	1725	3	0	0	3	0	0	copy fasta	NHLRC4	chr16	562005	574495
NHLRC4_chr16_562005_574495	0/0	t0004	1725	2	2	0	0	0	0	copy fasta	NHLRC4	chr16	562005	574495
NHLRC4_chr16_562005_574495	0/0	t0005	1725	1	1	0	0	0	0	copy fasta	NHLRC4	chr16	562005	574495
NHLRC4_chr16_562005_574495	0/0	t0006	1725	1	1	0	0	0	0	copy fasta	NHLRC4	chr16	562005	574495
NHLRC4_chr16_562005_574495	0/0	t0007	1725	1	1	0	0	0	0	copy fasta	NHLRC4	chr16	562005	574495
NHLRC4_chr16_562005_574495	0/0	t0008	1725	1	0	0	0	0	1	copy fasta	NHLRC4	chr16	562005	574495
NHLRC4_chr16_562005_574495	0/0	t0009	1725	1	0	0	0	0	1	copy fasta	NHLRC4	chr16	562005	574495
NHLRC4_chr16_562005_574495	0/0	t0010	1725	1	1	0	0	0	0	copy fasta	NHLRC4	chr16	562005	574495
NHLRC4_chr16_562005_574495	0/0	t0011	1725	1	1	0	0	0	0	copy fasta	NHLRC4	chr16	562005	574495
NHLRC4_chr16_562005_574495	0/0	t0012	1725	1	1	0	0	0	0	copy fasta	NHLRC4	chr16	562005	574495
NHLRC4_chr16_562005_574495	0/0	t0013	1725	1	0	0	0	1	0	copy fasta	NHLRC4	chr16	562005	574495
NHLRC4_chr16_562005_574495	0/0	t0014	1725	1	0	0	1	0	0	copy fasta	NHLRC4	chr16	562005	574495
NHLRC4_chr16_562005_574495	0/0	t0015	1740	1	0	0	1	0	0	copy fasta	NHLRC4	chr16	562005	574495
NHLRC4_chr16_562005_574495	0/0	t0016	1725	1	1	0	0	0	0	copy fasta	NHLRC4	chr16	562005	574495
NHP2_chr5_178144463_178158885	1/1	t0001	319	412	93	82	171	18	46	copy fasta	NHP2	chr5	178144463	178158885
NHP2_chr5_178144463_178158885	0/0	t0002	319	3	0	0	3	0	0	copy fasta	NHP2	chr5	178144463	178158885
NHP2_chr5_178144463_178158885	0/0	t0003	319	2	2	0	0	0	0	copy fasta	NHP2	chr5	178144463	178158885
NHP2_chr5_178144463_178158885	0/0	t0004	319	1	1	0	0	0	0	copy fasta	NHP2	chr5	178144463	178158885
NHSL1_chr6_138417043_138504494	0/1	t0001	2244	123	12	31	61	4	14	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	t0002	2245	39	7	10	14	2	6	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	t0003	2244	34	3	4	24	2	1	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	t0004	2241	14	6	7	0	1	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	t0005	2245	13	6	1	6	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	t0006	2245	13	0	1	9	0	3	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	t0007	2242	12	12	0	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	t0008	2242	10	7	0	3	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	t0009	2246	7	2	4	1	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	1/0	t0010	2243	6	2	2	1	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	t0011	2243	5	3	0	1	0	1	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	t0012	2246	4	3	0	0	0	1	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	t0013	2243	3	1	0	2	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	t0014	2244	3	0	0	3	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	t0015	2245	3	0	0	3	0	0	copy fasta	NHSL1	chr6	138417043	138504494