JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NHSL1_chr6_138417043_138504494	0/0	t0016	2243	3	3	0	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	t0017	2244	2	2	0	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	t0018	2239	2	2	0	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	t0019	2244	2	0	0	2	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	t0020	2254	2	2	0	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	t0021	2243	2	2	0	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	t0022	2241	1	0	0	0	1	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	t0023	2242	1	0	1	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	t0024	2242	1	1	0	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	t0025	2243	1	1	0	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	t0026	2244	1	0	1	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	t0027	2244	1	1	0	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	t0028	2244	1	1	0	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	t0029	2240	1	1	0	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	t0030	2245	1	1	0	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	t0031	2256	1	0	0	0	0	1	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	t0032	2243	1	0	0	1	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	t0033	2243	1	0	1	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	t0034	2244	1	0	0	0	0	1	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	t0035	2245	1	0	0	1	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	t0036	2246	1	0	0	1	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	t0037	2243	1	1	0	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	t0038	2256	1	1	0	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	t0039	2257	1	1	0	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	t0040	2241	1	1	0	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	t0041	2243	1	1	0	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	t0042	2241	1	1	0	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	t0043	2243	1	1	0	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	t0044	2243	1	1	0	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	t0045	2239	1	1	0	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	t0046	2244	1	0	0	1	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	t0047	2243	1	1	0	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	t0048	2255	1	0	1	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	t0049	2256	1	0	1	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	t0050	2257	1	1	0	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	t0051	2244	1	0	1	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL2_chrX_71905845_72158286	0/0	t0001	9929	48	7	4	36	0	1	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0002	9950	17	13	0	0	0	4	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0003	9950	11	1	7	0	2	1	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0004	9929	6	0	0	3	0	3	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0005	9946	4	3	1	0	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0006	9929	3	0	0	3	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0007	9940	3	0	0	0	0	3	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0008	9929	3	0	0	3	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0009	9928	3	0	0	3	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0010	9930	3	0	0	3	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0011	9949	2	2	0	0	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0012	9958	2	2	0	0	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0013	9946	2	2	0	0	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0014	9948	2	0	0	0	1	1	copy fasta	NHSL2	chrX	71905845	72158286